Protein Info for SO0534 in Shewanella oneidensis MR-1

Annotation: arsenical pump membrane protein, putative (NCBI ptt file)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 339 transmembrane" amino acids 7 to 26 (20 residues), see Phobius details amino acids 32 to 55 (24 residues), see Phobius details amino acids 75 to 98 (24 residues), see Phobius details amino acids 114 to 133 (20 residues), see Phobius details amino acids 145 to 168 (24 residues), see Phobius details amino acids 176 to 196 (21 residues), see Phobius details amino acids 217 to 235 (19 residues), see Phobius details amino acids 247 to 269 (23 residues), see Phobius details amino acids 280 to 302 (23 residues), see Phobius details amino acids 308 to 330 (23 residues), see Phobius details TIGR00832: arsenical-resistance protein" amino acids 1 to 330 (330 residues), 440.7 bits, see alignment E=1.8e-136 PF13593: SBF_like" amino acids 16 to 317 (302 residues), 33 bits, see alignment E=4.1e-12 PF01758: SBF" amino acids 47 to 242 (196 residues), 145.3 bits, see alignment E=1.9e-46

Best Hits

KEGG orthology group: K03325, arsenite transporter, ACR3 family (inferred from 100% identity to son:SO_0534)

Predicted SEED Role

"Arsenical-resistance protein ACR3" in subsystem Arsenic resistance

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q8EJD3 at UniProt or InterPro

Protein Sequence (339 amino acids)

>SO0534 arsenical pump membrane protein, putative (NCBI ptt file) (Shewanella oneidensis MR-1)
MGIFERYLSVWVGLSILAGVVLGNVVPNVFAAVAALEFAHVNLVIALFIWVMIYPMMVQI
DFSAVKDVGNAPKGLILTLFINWLVKPFTMALLGWLFFKLVFADWVDPQTASEYIAGMIL
LGVAPCTAMVFVWSQLTKGDPNYTLVQVSVNDIIMVFLFAPLSALLLGVSDIQVPWQTLL
LSVVLYVLLPLIAGVMTRKRLEARNDASAVPQLLAKLKPWSVIGLLATVVLLFGFQAETI
ISQPQNILLIAIPLIIQSYGIFILTYWLALKLKLTHAIAAPASMIGSSNFFELAVAVAIS
LFGLHSGAALATVVGVLVEVPVMLSLVYFANRTRHWFQS