Protein Info for SO0404 in Shewanella oneidensis MR-1

Annotation: hypothetical protein (NCBI ptt file)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1152 signal peptide" amino acids 1 to 22 (22 residues), see Phobius details PF16313: DUF4953" amino acids 548 to 647 (100 residues), 41.1 bits, see alignment E=7.1e-15

Best Hits

KEGG orthology group: None (inferred from 100% identity to son:SO_0404)

Predicted SEED Role

"MoxR-like ATPase"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q8EJQ8 at UniProt or InterPro

Protein Sequence (1152 amino acids)

>SO0404 hypothetical protein (NCBI ptt file) (Shewanella oneidensis MR-1)
MKKSMVCLAITSALTLVGCGAGDEPYKELPKDEKQVTTADIDKATERQYLYIRSVGKAPR
YAAEVRGFTQGDPKLVTLHKTENGIQVRQIDRDNIGLGHDSRYPNEYNQAPVLTIPGEYI
DFKCTEDKWRECINVEQVNTDANLTWQNKRYFVPDFAKAKIAELGINDIFTFGECVTETE
APRLVNTQGQKGYEMDLAKGVVNFEIEHTYQASPSCFNQFYGGNLDNLSFTTTEFISIVA
VDQLASKDYQAIPYAENEKGAFGFFTSSHTYRDATDSEGVDGYVRTYLNRFNPAKSELTY
YLSNNFYDAKNKPFLDAAIESVTAINIQNKLYKTGFPQIKLEQANDKRHGDLRYSNITLF
DEPLDNGLAGYGPSAANPLTGEIVSARVNQYSSNLKQGAVRYYRQVRLDYNRGKLDANSV
TSLTGEPYVSNLNKPDVSLDTAPVEAAAFEQPTQQLIAAPKSLLLTPKDNSFDALADFDE
KTQAFWSENSMMHVDTVFATGGSDRELPRGIKGHEIDWKKADMWVDGKVGGKLAAFEDLP
ISLQDTLTTALAAQAFAGTLTHELGHTFGLRHNFAGSRDHDNTFNQAQLKELKAAFSDAG
YPDITVNAEFSSQMDYNVNRFATTFEPYDLAALRFGYAREVETKTNEFVSLKAEDAKRRD
ELAKGVVNGDTRFGALYNIEQNNSLRQYSFCTDEHVSLNSNCNRGDAGKNLDDIGQFYIE
KYFDSYETMNLRHNRQSLFEDHSLSYAINRKAQFDEIRQFIEDVSFLEQLFGLSENFFAG
ECERLAAAGSEAWYCANQRAMNQSADFFLKLVGENDATLDVTYKQADGSVALRQQYNFAK
VLEQYRFKSGDMKAQFEPGEVISQFSDSPEALKELIIKSQINPKFQDLLTADVSFSGRLL
NGIKTPASSPNHPYVNERDVLGVWPDKLLAVRALVSRTTPRSTSSRGYKALVDLPNVGPV
FQDMLCKMTMGEGPGLTRGNTPLFTESCGVSGKLDSYLPYYTDFAQQSIEPLPNYDRSVS
RYFQFDTVNGQPKGKSNLLQMILRQVVLASVDSDYQGEQKARVWREYVGIRLAGPALATQ
AEVTVNGRVYAATAENTLALALINRIKEMETFKTQAGEATLAIKLNNGTVGEIIDRQLSR
DQLVLSYLPVLD