Protein Info for SO0348 in Shewanella oneidensis MR-1

Annotation: acyltransferase family protein (NCBI ptt file)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 transmembrane" amino acids 12 to 35 (24 residues), see Phobius details amino acids 47 to 64 (18 residues), see Phobius details amino acids 121 to 139 (19 residues), see Phobius details PF01553: Acyltransferase" amino acids 73 to 226 (154 residues), 55.5 bits, see alignment E=2.7e-19

Best Hits

KEGG orthology group: None (inferred from 100% identity to son:SO_0348)

Predicted SEED Role

"Acyltransferase family protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q8EJV8 at UniProt or InterPro

Protein Sequence (300 amino acids)

>SO0348 acyltransferase family protein (NCBI ptt file) (Shewanella oneidensis MR-1)
MGTLFSQLKGCIAFLGYVVNTLFWVVPIVLGSFIKLIPLPSLRTATSYFLDFCASAWISV
NGVIERVLHPVQIELSGETQFSTKEWYMVIANHQSWVDILILQRVFNRRIPFLKFFLKQE
LIYVPVLGLAWWALDFPFMRRYSTAQLKKNPKLKGKDIEITRKACAKFKTKPVSVMNFVE
GTRFTKAKHTKQNSQFQHLLKPKAGGMAFALSAMGEQIHKLVDVTIYYPDITPSYWDYLT
GKLPKVKVHITVTDISPDMRGDYMNDRDFKISFQEQLNELWLAKDQVISQLASQADKEVR