Protein Info for SO0316 in Shewanella oneidensis MR-1

Annotation: hypothetical phosphatidylethanolamine-binding protein (NCBI ptt file)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 159 TIGR00481: Raf kinase inhibitor-like protein, YbhB/YbcL family" amino acids 19 to 157 (139 residues), 137.7 bits, see alignment E=1.2e-44 PF01161: PBP" amino acids 23 to 157 (135 residues), 134.7 bits, see alignment E=1.4e-43

Best Hits

Swiss-Prot: 50% identical to YBCL_ECOLI: UPF0098 protein YbcL (ybcL) from Escherichia coli (strain K12)

KEGG orthology group: K06910, (no description) (inferred from 100% identity to son:SO_0316)

Predicted SEED Role

"Phospholipid-binding protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q8EJZ0 at UniProt or InterPro

Protein Sequence (159 amino acids)

>SO0316 hypothetical phosphatidylethanolamine-binding protein (NCBI ptt file) (Shewanella oneidensis MR-1)
MTLSSKDIGEGQLLSNQFVFNGFGCTGENISPQLAWRDAPEGTKAYAVTAYDPDAPTGSG
WWHWAVYNIGGDQQQLAQGAGSKHNGLPKGAIALKNDFGTTDFGGACPPQGHGMHRYEFT
VWALPNPLELPKDASPALLGFMLRAQALGSAKLTAVYHR