Protein Info for SO0308 in Shewanella oneidensis MR-1

Annotation: conserved hypothetical protein (NCBI ptt file)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 406 transmembrane" amino acids 116 to 137 (22 residues), see Phobius details amino acids 143 to 160 (18 residues), see Phobius details amino acids 169 to 188 (20 residues), see Phobius details amino acids 194 to 216 (23 residues), see Phobius details amino acids 236 to 256 (21 residues), see Phobius details amino acids 267 to 286 (20 residues), see Phobius details amino acids 295 to 313 (19 residues), see Phobius details amino acids 319 to 337 (19 residues), see Phobius details amino acids 344 to 366 (23 residues), see Phobius details amino acids 380 to 400 (21 residues), see Phobius details PF06738: ThrE" amino acids 12 to 250 (239 residues), 218.3 bits, see alignment E=1.1e-68 PF12821: ThrE_2" amino acids 276 to 398 (123 residues), 53.6 bits, see alignment E=2.7e-18

Best Hits

KEGG orthology group: None (inferred from 100% identity to son:SO_0308)

Predicted SEED Role

"Protein of unknown function DUF1212"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q8EJZ8 at UniProt or InterPro

Protein Sequence (406 amino acids)

>SO0308 conserved hypothetical protein (NCBI ptt file) (Shewanella oneidensis MR-1)
MDNEQFLEKRKFIIKLGKALHKFGTPAYRLETHLQTVSRTLGIEGYFLISPTSMTFVLQH
DTDQEYNHVARVKPGELDLGSLARTDELVDELTSGKRTLTEALDRLEEIANKPNPYGPVL
TCFSFGTSAAAFAMLMGTGWNDVFWSGLLGLLVYGFVYRAERSSRMAEVLEPFATIVCAI
VACAIARIDPNINIPVVILSSIIIFIPGLALTLGLAELAARDLISGTARIMDASMLLFKL
YFGAVLGMAIGKAMFGEAIYIEPEGLPRWAIWSAVPILSMALVFIFKARMQDSPWGVLAG
IVAFFSAMLGGHFFGDSVGIFFGALAVGVYSNLYARWMKAPASIALLQGIVILVPGSKTY
IGLNALISGETMLNQSHIGSQIFLIFMSLIAGLIFANVVVPPRRTL