Protein Info for SO0129 in Shewanella oneidensis MR-1

Annotation: conserved hypothetical protein TIGR00427 (NCBI ptt file)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 197 transmembrane" amino acids 6 to 27 (22 residues), see Phobius details amino acids 39 to 64 (26 residues), see Phobius details amino acids 70 to 88 (19 residues), see Phobius details amino acids 104 to 126 (23 residues), see Phobius details amino acids 137 to 157 (21 residues), see Phobius details amino acids 169 to 186 (18 residues), see Phobius details PF01914: MarC" amino acids 3 to 192 (190 residues), 185 bits, see alignment E=1.1e-58

Best Hits

Swiss-Prot: 62% identical to YHGN_ECOLI: UPF0056 inner membrane protein YhgN (yhgN) from Escherichia coli (strain K12)

KEGG orthology group: K05595, multiple antibiotic resistance protein (inferred from 100% identity to son:SO_0129)

Predicted SEED Role

"Multiple antibiotic resistance protein marC"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q8EKG4 at UniProt or InterPro

Protein Sequence (197 amino acids)

>SO0129 conserved hypothetical protein TIGR00427 (NCBI ptt file) (Shewanella oneidensis MR-1)
MDIFSAAVMLFLIMDPLGNLPIFASILRHIDPKKRRRVLIRELIFALVIMLAFLYAGEAI
LSFLNLRSESVSIAGGIILFLIAIRMIFPQPGGVVGLAAGEEPFIVPMAIPLMAGPSILA
ALILLAHTDSSRMTDWTIALVSAWAASAVILMFYKLFTRMLGEKGLTAVERLMGMVLVMI
SVQMFLDGVSNYMKTAG