Protein Info for SO0104 in Shewanella oneidensis MR-1

Name: fdhE
Annotation: fdhE protein (NCBI ptt file)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 302 transmembrane" amino acids 146 to 167 (22 residues), see Phobius details PF04216: FdhE" amino acids 19 to 296 (278 residues), 300 bits, see alignment E=1.4e-93 TIGR01562: formate dehydrogenase accessory protein FdhE" amino acids 26 to 296 (271 residues), 214.4 bits, see alignment E=1.4e-67

Best Hits

Swiss-Prot: 100% identical to FDHE_SHEON: Protein FdhE homolog (fdhE) from Shewanella oneidensis (strain MR-1)

KEGG orthology group: K02380, FdhE protein (inferred from 100% identity to son:SO_0104)

Predicted SEED Role

"formate dehydrogenase formation protein FdhE" in subsystem Formate hydrogenase

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See P59188 at UniProt or InterPro

Protein Sequence (302 amino acids)

>SO0104 fdhE protein (NCBI ptt file) (Shewanella oneidensis MR-1)
MSHTAEIPMVPGSESPLELKPLKAVDPKAVYHRRAQRLLSLAKDSPLADYFELCRRVVAI
QARLAAEADFGQLLAWGKDEAIPLSHLGSEADSYWQGLLQQLLSDLLPQVGEDLARVLRL
LMQQSPEQLTSWGASLRQGHMSAVPARFSLFIWAAMGVYWSHWAPMVIKRIDQRKVAQQN
LCPICGSHPVASVIVDQPRAGLRYLHCSLCESEWHYIRAHCTSCGQDKGTTLWSFDDTQA
QVRIESCDECHGYTKMMFVEKSPLMDVVADDLATLMLDSELNAKGFGATTVNPLLLAHET
EQ