Protein Info for SO0066 in Shewanella oneidensis MR-1

Annotation: conserved hypothetical protein (NCBI ptt file)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1300 1400 1500 1600 1700 1800 1898 signal peptide" amino acids 28 to 28 (1 residues), see Phobius details transmembrane" amino acids 29 to 46 (18 residues), see Phobius details PF11974: bMG3" amino acids 536 to 638 (103 residues), 69.8 bits, see alignment 5.9e-23 PF01835: MG2" amino acids 648 to 746 (99 residues), 75.1 bits, see alignment 1.7e-24 PF17972: bMG5" amino acids 775 to 876 (102 residues), 54.4 bits, see alignment 6.2e-18 PF07703: A2M_BRD" amino acids 1014 to 1152 (139 residues), 58.3 bits, see alignment 3.8e-19 PF00207: A2M" amino acids 1219 to 1307 (89 residues), 46 bits, see alignment 1.4e-15 PF17973: bMG10" amino acids 1729 to 1882 (154 residues), 50.7 bits, see alignment E=7.4e-17

Best Hits

KEGG orthology group: K06894, (no description) (inferred from 100% identity to son:SO_0066)

Predicted SEED Role

"Large extracellular alpha-helical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q8EKM6 at UniProt or InterPro

Protein Sequence (1898 amino acids)

>SO0066 conserved hypothetical protein (NCBI ptt file) (Shewanella oneidensis MR-1)
MKALLANIFGHWQSPPWMHWCKAHPGKSIGSLLALLLVSAGLWTAWDWYQHLPQPQTVQS
SIFAPSLTNYEADKPEVAPLVIRFSDSVAPLDNIGKPLNKGIKLSPEIAGQWRWSSDKHL
EFQPDADWPVDKTYSLTLDGDALLASHILLDNYIFEFKTAPFSAKISDARLYYEPNQPNI
QKVVATVHFSHPVATQTVKSALSVVLSPGLTYSQGSDYQLTFDDKHLNAYIHTAPLATPL
EPSTVKLELSNKIKAAFGGNAAEEDSTEVSVPGRYQLSFSAAQISFAKNDQEEPEPVLTM
ESSRPVADAALKGKVEAWLLPPKDPQGNTYWGTQNITDTVLRKASKVTLIQNPGPEGLNQ
LHSFKFQAPVGRYLAVRVAKHVEGQGGYLSRDAAFSVVRMPEYPKALAFLGEGALLTLND
DQRLGYLVRGVADVRIEVAQLLPDQIHQLVDEDSGIFKVQYFNNNLFDRLVTRTEIIQKF
VTDDPAKTSYGEVDLKSYFADKRGIFVLKLTSAEDHNDDTFDYYPREAHDLRFVVVTDMG
ILAKRSVDGSLDIFVQSLSQGLPIANAKVDVVGRNGLSVAEGFTDLGGHVHLPKLGQLRR
EKRPLFYRVEKAGDVSFLPIGDWRRELDMSRFDIGGSNESEDPNTLSAYLFTDRGLYRPG
ETAHVASLVRSQSWGASLDGLPVKMVVTDPRGIDVLDRTFNLDSSGFNSLDFSSTEAAVA
GEYTASLSLIRDKHNLTRLGEESFKVRDFEPDRIKVRVTLGATESGTSIGWLKPEEVSAK
VQAEQLFGGPAGDRRVTGEMVLSPTDISFKELPGYYFGVQGELKESFRETLAEAKTNEEG
VAGLNLALDRFGQTTFKLHLLAKVYEAGSGRNVSAQDKALVSNADFLLGYKADGDLGFIS
KDGERHLKLVAVGQDLKPRVTQLQAERIARRWVSVLVKQRDGTYRYESRRKDELLESNTL
QLNKGQLDIALDTSEPGDYQLRFIDAEGHQLNQIDYSVAGQGNASRALERNAELQLKLDK
DEYQPGEMINIAIQAPYTGAGLITIERDKVYAFEWFNADSSRSVQSIQLPEGIEGNAYVN
VQFLRAPDSDEIFMSPLSYGVKPIKIDLGARRQPLSLSLPEQMKPGNDLKIALNLPTDSK
VVVFGVDEGILQVARYKAPDPLGHFFAKKALTVNSSQILDLLLPDLNVLMRNAAPGGDAE
ALLAANLNPFKRKRASPVVYWSGLQDLSAGEQQFNYSVPDTFNGKIHFFAVSVTDSNMGV
AEASVNVKAPVVMTPNVPAFMAPGDEAEITLGLYNTESTSTHVQVALSLEGGLAPLAGAE
QSFDILPGQEVTARFTLKAIEPLGEAKLHWMLKGEQGDFKIGESISIRPLTTHRVQLQTA
VLDSAEKQLSLERQLFEPFSRKEAGLQSSPLVWAQGLSAYLESYPHACTEQLVSKSVPAL
VLGKPQDNLSAFNQLMTQLRSRQNSEGAFGGWAANPVVEPMVTLYVVDMLLDAQGNGYAV
PQDMLDRANGYLSELSSSPSSGLSELRQRAYGAYLLARQGVQVSGALADIRDRLQRYYPK
DWQSDIASAWLAASFTLMQQQTLAKPLWDAQVWELMQKTPKHLDLYLDPLVHDAQLLTLV
ARHAPERLAKLPEGLLERVGNWLSAQRYTSLSAGTLVRALAAYDQQATSGELTLTAQVAD
KWIIQSLPKAELPFTTNKIKVQKTGDADAFYMSMESGFDKQPVAAFSHGLEVSRDYLDLK
GQPLKGLKVGEEFLVRLRLRATSFEQLEQVVVIDLLPGGVEPVYRDKEVVMVVTVVQEGE
EGEESDEEGDGEEGEAFNGWQPPIGVGEQSDWSPTWLNVREDRVVLYGTASRDVGTFTYK
ARATNAGHFQVPAPYAEGLYDPLQQALGKGSELVISAP