Protein Info for SO0017 in Shewanella oneidensis MR-1

Annotation: hypothetical amidohydrolase (NCBI ptt file)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1049 PF07676: PD40" amino acids 81 to 107 (27 residues), 27.9 bits, see alignment (E = 4.2e-10) amino acids 179 to 193 (15 residues), 18.3 bits, see alignment (E = 4.5e-07) amino acids 228 to 249 (22 residues), 12.3 bits, see alignment (E = 3.4e-05) PF01979: Amidohydro_1" amino acids 961 to 1025 (65 residues), 58.4 bits, see alignment 1.9e-19 PF07969: Amidohydro_3" amino acids 965 to 1024 (60 residues), 34.6 bits, see alignment 4e-12

Best Hits

KEGG orthology group: None (inferred from 94% identity to she:Shewmr4_0011)

Predicted SEED Role

"FIG01058271: hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q8EKS3 at UniProt or InterPro

Protein Sequence (1049 amino acids)

>SO0017 hypothetical amidohydrolase (NCBI ptt file) (Shewanella oneidensis MR-1)
MLSLNPPIAHADEVQKPSWDVNAPTNAPLKKVKIDVNEGTWMNLSVSPDGQHLVFDLLGD
IYQIPVTGGEAKPLAQGISWQMQPVYSPNGKHIAFTSDADGGDNIWIMNADGSNPRTVTS
ETFRLLNSPAWSPDSQYLIGRKHFTASRSLGAGEVWLYHVAGGEGVKLTERPNDEKDLGE
PAYSPDGRYIYFSQDDTPGKTFHYSKDSVNGIYKIKRYDTKTGNIEILIEGTGGAIRPTP
SPDGTKLAYIKRDDFQSSLYLLDLKSGETTKLFGDLDRDMQETWAIHGVYPSMAWTQDNK
DIFFWAKGKINRLNVANKTVTNVPFSVKTQLDVQPSVRFKQDIDKDVFDVKMLRMAQVSP
DGSKVAFEALGKIWLKSLPDGKMSRLTELGNDIGELYPQWSRDGKNIVFTTWNDQDQGAV
QVISAKGGKAKQLTTEPGKYVEPTFAPNGELVVYRKTQGGNLTPRTWSQEPGIYKVDLKT
KQNTKITAEGYQAQFGASAERIFFMNSGDDDTPQLASINLDGFDKRVHYSSKHATEFRVS
PDGEQLAFAERFKVWVTPFAKHGETVEIGPNASNLPVTQLSVRAGESISWNSKSNQLYWT
LGPELYQTEVDSQYLKKDEQAKPSIINLGFTEKADVPRGTVAFVGGKVITMENDQVIDKG
VVIVKDNHIVAVGDANTPIPKDAQVIDISSKSIMPGLFDAHAHGAQADDEIVPQQNWALY
SGLSLGVTTIHDPSNDTTEIFAASEQQKAGNIVGPRIFSTGTILYGANAPGYTSHIDSVD
DAKFHLERLKKVGAFSVKSYNQPRRNQRQQVIAAARELEMMVVPEGGSLLQHNLTMVADG
HTTVEHSLPVASIYNDIKQFWGQTKVGYTPTLVVAYGGISGENYWYDKTDVWAHPRLSMY
VPSDILQARSMRRPHVPESHYNHFNVAKVANEFNKLGIHPNIGAHGQREGLAAHWEMWMF
AQGGMSNMDVLKTATINPATTFGLDHQLGSIKTGKLADLIVIDGDPLADIRVTDRVTYTM
VNGKLFDAESMNQLNGNKQQRKPFFFEKI