Protein Info for Rru_A3705 in Rhodospirillum rubrum S1H

Annotation: Cell divisionFtsK/SpoIIIE (NCBI)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 849 transmembrane" amino acids 22 to 45 (24 residues), see Phobius details amino acids 76 to 98 (23 residues), see Phobius details amino acids 106 to 124 (19 residues), see Phobius details amino acids 154 to 183 (30 residues), see Phobius details PF13491: FtsK_4TM" amino acids 28 to 188 (161 residues), 65.1 bits, see alignment E=1.6e-21 PF17854: FtsK_alpha" amino acids 345 to 445 (101 residues), 100.3 bits, see alignment E=1.6e-32 PF01580: FtsK_SpoIIIE" amino acids 453 to 672 (220 residues), 255.9 bits, see alignment E=7.3e-80 PF09397: FtsK_gamma" amino acids 776 to 836 (61 residues), 91.1 bits, see alignment 7.4e-30

Best Hits

KEGG orthology group: K03466, DNA segregation ATPase FtsK/SpoIIIE, S-DNA-T family (inferred from 100% identity to rru:Rru_A3705)

Predicted SEED Role

"Cell division protein FtsK" in subsystem Bacterial Cell Division or Bacterial Cytoskeleton or Bacterial RNA-metabolizing Zn-dependent hydrolases

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q2RMZ6 at UniProt or InterPro

Protein Sequence (849 amino acids)

>Rru_A3705 Cell divisionFtsK/SpoIIIE (NCBI) (Rhodospirillum rubrum S1H)
MADRTARSRLLPPAAIIALRSALLRVGGALVVLACTALAAALITYSPSDASFNTASGAPV
GNALGAGGAVVADLALQWGGLAVIAPLLAVILWGLRLLAGQTLPGAWARTLGLILGTLLV
AVAIDPITPPSEWPVTAGLGGFAGYLLRERVSIGLAVIGIEIDLGWLIGGLAGLLAFLCF
QWVTAIRWRDYAATAGILLRTSGEAGTAAAPAASAKARAAAAAAGQGKRPGARKSPAEGA
KPAKAEAQAGRREPRMGEAPDRATAAVTAGRPEDGRLAPSFGGEGDRRSGDAPLAAAPAS
RPLTIDTAPAVALAEPPSRPAPSRPGTPERGRPMGASIDAPPFALPALDLLASAETSRPL
RVDEDALAENARMLEGVLSDFGVRGQIVKVRPGPVVTLYELDPAPGTKTSRVVGLADDIA
RSMSAISVRIAVVPGRSVIGIELPNAKREMVLLRELLSTPDFIRHPGSLILALGKDIGGT
GVTVDLARMPHLLIAGTTGSGKSVAVNTMILSLLYRLSPQQVRFIMIDPKMLELSVYDGI
PHLLTPVVTDPHKAVVALKWAVREMEERYRAMSQLGVRNIAGYNQKVGETAAKGGKLTRT
VQTGFDAETGKPIYVEQDMDLQPLPFIVVIVDEMADLMLVAGKDVEGAIQRLAQMARAAG
IHLIMATQRPSVDVITGTIKANFPTRISFQVTSRIDSRTILGESGAEQLLGQGDMLSMAA
GGRITRVHGPFVADLEVEKICAHLRAQAQPDYLDAIIEDEEASAPAPVAGGVGEGESDGL
YDQAVALVARERKASTSFVQRHLQIGYNRAARIIERMEAEGMVSRANHVGKREVLLPASA
DAYDDGADL