Protein Info for Rru_A3653 in Rhodospirillum rubrum S1H

Annotation: Protein of unknown function DUF214 (NCBI)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 847 transmembrane" amino acids 25 to 46 (22 residues), see Phobius details amino acids 266 to 288 (23 residues), see Phobius details amino acids 296 to 316 (21 residues), see Phobius details amino acids 323 to 347 (25 residues), see Phobius details amino acids 359 to 381 (23 residues), see Phobius details amino acids 410 to 427 (18 residues), see Phobius details amino acids 433 to 458 (26 residues), see Phobius details amino acids 481 to 504 (24 residues), see Phobius details amino acids 725 to 745 (21 residues), see Phobius details amino acids 776 to 801 (26 residues), see Phobius details amino acids 807 to 831 (25 residues), see Phobius details PF12704: MacB_PCD" amino acids 31 to 237 (207 residues), 36.6 bits, see alignment E=6e-13 PF02687: FtsX" amino acids 271 to 388 (118 residues), 43.4 bits, see alignment E=3.2e-15 amino acids 726 to 837 (112 residues), 41.4 bits, see alignment E=1.3e-14

Best Hits

KEGG orthology group: K02004, (no description) (inferred from 100% identity to rru:Rru_A3653)

Predicted SEED Role

"ABC transporter, permease protein, putative"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q2RN48 at UniProt or InterPro

Protein Sequence (847 amino acids)

>Rru_A3653 Protein of unknown function DUF214 (NCBI) (Rhodospirillum rubrum S1H)
MRSPGLTSGPVALRFALRELRAGLSGFRVLIACLAIGVAAIAAAGSVNRAIDEGLSANAR
QLLGGDLELRLMYRDLSAAEIATLERLGTLTRYTEMRAMVRPETNAEGRRLLVEMKGVEP
GYPLYGAVELTDGQPLAGALAERDGLAGAVAAPALADRLGIKVGDRLRVGDAVVELRGVI
AREPDAIGGAFSFGPRLMVAAPTVAKTGLIQPGSLVEYHGLLRLEGGSDLARAKDILAAE
HPQAGWRLRGPEEAGAGAQRFLDRLTLFLVLVGLTSLLVGGIGVANAVKAYLDGRIRTIA
VLKCLGAPAGLIFRVYMIQIGLISLAGVGIGLLIGAALPPLAIALLADLLPVPAEAGVFA
GPLLLAAAFGLLTALVFSLGALSRARDIPATALFRGESAKGRGGRWRDRLMIAAGALTLA
ALAVATADDKPLAAWFVAGAGLALLLFRGAAALVGLLAKAAGRPSGLPALRLALTNLHRP
GAATTSVVLSLGLGLSVLVAIALIQGNLDRQIREGIPAQAPTFFFIDIQPQQTATFEAAV
HGADPGAKVVLADMIRGRIRAFNGVPVAEERIAPEARWAVRGDRGFSTAETLPEGSTLQA
GAWWPADYQGPPLFSLTSDLAEGMGLAPGDAVTVNILGRDLTGTLANTRKVDWGSLTMNF
AFVVSPGAFAGAPRSYIATVRASEALASDVDKAVAAVLPNVSAIRVRDALDTVTAIMEGA
GNAVRISALLTLIAGAVVLGGAFAANHGRRLREAVTLKVLGATRGQILRAYLTEYGILGL
ATGLIAALVGSVAAWGVLVFALRADWVLLPGVVATTAVGCVLATMAAGLAGTWRALGAKA
APFLRNE