Protein Info for Rru_A3517 in Rhodospirillum rubrum S1H

Annotation: Major facilitator superfamily MFS_1 (NCBI)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 428 transmembrane" amino acids 12 to 32 (21 residues), see Phobius details amino acids 50 to 71 (22 residues), see Phobius details amino acids 83 to 101 (19 residues), see Phobius details amino acids 107 to 129 (23 residues), see Phobius details amino acids 140 to 163 (24 residues), see Phobius details amino acids 171 to 191 (21 residues), see Phobius details amino acids 235 to 258 (24 residues), see Phobius details amino acids 270 to 292 (23 residues), see Phobius details amino acids 300 to 319 (20 residues), see Phobius details amino acids 325 to 346 (22 residues), see Phobius details amino acids 358 to 381 (24 residues), see Phobius details amino acids 392 to 412 (21 residues), see Phobius details PF07690: MFS_1" amino acids 21 to 344 (324 residues), 91.8 bits, see alignment E=2.1e-30 amino acids 270 to 415 (146 residues), 36.8 bits, see alignment E=1.1e-13

Best Hits

KEGG orthology group: None (inferred from 100% identity to rru:Rru_A3517)

Predicted SEED Role

"transporter, putative"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q2RNI4 at UniProt or InterPro

Protein Sequence (428 amino acids)

>Rru_A3517 Major facilitator superfamily MFS_1 (NCBI) (Rhodospirillum rubrum S1H)
MPTKRPPAGLHYAWIVAAVTFLVLLVGAGIRATPGILIVPLERDFGWSTATISTAIAVNI
FLFGMIGPFAVAVMERFGLRRSVVGALLVLAGGVALTTLMSKPWHMVVLWGLVVGSGSGM
IALVLGATVAGRWFGKRRGLVLGLLTASSATGQLIFLPILAHISVDQGWRTMALVVAGAA
LLLVPLAGLLLRDRPGDLGLPRYGETTLEPPPGVPINPLRRATSALALGLRSRDFWLLSG
TFFICGASTNGLVGTHMIAACFDQGIPEVAAAGLLALMGLCDLVGTTASGWLTDRYDSRV
LLIWYYGLRGVSLLFLPYAFDLDVYGLSLFAVFYGLDWIATVPPTVRLAGQAFGEGNAAL
MFGWIAAAHQIGAATAAWAAGALRTASGVYDGAFFSAGLLCLIAVVLVVFIGRGPRQTPI
GRVAMEKP