Protein Info for Rru_A3434 in Rhodospirillum rubrum S1H

Annotation: UvrD/REP helicase (NCBI)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1187 TIGR02784: double-strand break repair helicase AddA" amino acids 23 to 1173 (1151 residues), 1191.9 bits, see alignment E=0 PF00580: UvrD-helicase" amino acids 25 to 493 (469 residues), 162 bits, see alignment E=6.1e-51 PF13245: AAA_19" amino acids 34 to 83 (50 residues), 27 bits, see alignment (E = 1.1e-09) PF13361: UvrD_C" amino acids 814 to 909 (96 residues), 39.9 bits, see alignment E=9.3e-14 PF12705: PDDEXK_1" amino acids 1020 to 1161 (142 residues), 43.3 bits, see alignment E=1.2e-14

Best Hits

KEGG orthology group: None (inferred from 100% identity to rru:Rru_A3434)

Predicted SEED Role

"FIG061771: ATP-dependent nuclease subunit A"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q2RNR7 at UniProt or InterPro

Protein Sequence (1187 amino acids)

>Rru_A3434 UvrD/REP helicase (NCBI) (Rhodospirillum rubrum S1H)
MTRPPSEPAPLLAEADPLDPAKPQRRAADPLASAWVAASAGTGKTKVLTDRVLRLLLAGT
PPQRLLCLTFTKAAAAEMANRVSAVLAGWATLPEEALRGRLASLLGSLPEGEEAIEALSG
RARRLFAQVLDCPGGLRIQTIHGFCQTLLRRFPLEAGVAPHFEVLDDREAQALHQSARDA
VLRAARQAEDGEGGDPALAAALAVVTGHLSESRFDEVMAALGGQRGRLLAALDHFGGAEA
LGKAIRDSLGLAADDTPETVLADGCAEGAFDGPSLRAAAAALIAGGKTDQERGLRIAAFV
SETDPAIREGLFWTYIGAFLTKTDEKPVKTLCTKPVEKAHPGTLESLEAEQQRIWTLRER
LRAATTAQASEALLTLVGAMLKDYQRRKRALGRMDYEDLILAARRLLAGDGAAAWVLFKL
DGGLDHLLVDEAQDTSPDQWAIASALAGEFFTDSARWDGTRPRTVFAVGDRKQSIYGFQG
ADPKAFEDMRRHFHDAVSDIGGHFAEVPLNISFRSTRAVLEAVNAVFARQPARDGVAQDD
ADSGVAEDITHHAFRKDAGGLVELWPAMEPAPRVVGDPWKPPVERIGLESARARLAKRVA
QRIKTMTSGGELLESQGRPIRPGDILVLVRRRGGFEEELVSALKSAKVEVAGVDRMTLTD
QLAVMDLIALGKALLLPEDDLTLASVLKGPLIGLDEDALFTLARDRGRDERLWDRLRPHA
GAENAYGKAMEIIEPLRDRAGRLAPHEFYAHVLDGPLNGRRLLLGRLGPEAEDPIDEFLA
LTLAHERVGPPALQGFLSWLEKGTVEIKRDLDQGALDAVRIMTVHGSKGLQAPVVFLPDT
LAKPTGNDLLLWTADKGVADALPFWCPSKADRGAAIEAMIDALKVERDREYRRLLYVAMT
RAADRLYICGWETLKRPAEDCWYALIHDALAASAQTVEVPLLDATGALKDTEVLRLTCPQ
EGSPSPSDSAAPADEEGEAPAAWAALPPPLEPTPSRPLAPSHVGDEGAARSPLDGRGDPR
RFLRGRLIHKLLQLLPELPDEDRGPAARRWLSRPAWALEAEEIGALSAEVLAVLDDPAFR
AVFAPGSRAEVPLVGLVGNHVVSGQVDRLAVTDDEVLIVDYKTNRPPPRAVDLVDIAYIR
QMAAYRALLAQVFPSRVARCVLLWTDGPFAMEIPAERLAEEARKLGW