Protein Info for Rru_A3253 in Rhodospirillum rubrum S1H

Annotation: MJ0042 finger-like region (NCBI)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 361 transmembrane" amino acids 220 to 241 (22 residues), see Phobius details TIGR02098: MJ0042 family finger-like domain" amino acids 1 to 37 (37 residues), 46.6 bits, see alignment 1e-16 PF13717: zinc_ribbon_4" amino acids 1 to 35 (35 residues), 52.6 bits, see alignment 5.4e-18 PF13719: zinc_ribbon_5" amino acids 1 to 37 (37 residues), 42.7 bits, see alignment 5.5e-15 PF11906: DUF3426" amino acids 227 to 356 (130 residues), 54.8 bits, see alignment E=1.7e-18

Best Hits

KEGG orthology group: None (inferred from 100% identity to rru:Rru_A3253)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q2RP97 at UniProt or InterPro

Protein Sequence (361 amino acids)

>Rru_A3253 MJ0042 finger-like region (NCBI) (Rhodospirillum rubrum S1H)
MIITCPSCAAKFTLPDGALGSEGRKVKCAKCAHVWQAKAEGAASSFSIDEGYDDSPFAQD
EPDFPEPAFAPPPPPPPRPSPARPNPPRPAAAPSAPVFDAAPPRLGKQDGLPLEMDPEPP
SRIPAHDDAALDEDLAKLDSILGTLKGGGVLKDKARGAPEIAGDDFADDDHLHDFLQTRV
LGEDDDLEDLDGFMAAGEPEAIPRVFTGPRPSGRRRGATALKVVVMTLVALWLLALGGWF
LRDPLVALVPGLAPVYTALGIDVTDPRSEVIFQNVVSTLETRDETRLLVVRGLLFNPSDE
NREVPRLRLTVIDDSQKVLQQVTAAPPQSVLAPGAQIPFEVSMENPSQLATGFRVVFDKA
G