Protein Info for Rru_A3246 in Rhodospirillum rubrum S1H

Annotation: H+-transporting two-sector ATPase, A subunit (NCBI)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 241 transmembrane" amino acids 28 to 47 (20 residues), see Phobius details amino acids 83 to 105 (23 residues), see Phobius details amino acids 112 to 133 (22 residues), see Phobius details amino acids 146 to 164 (19 residues), see Phobius details amino acids 184 to 210 (27 residues), see Phobius details amino acids 214 to 235 (22 residues), see Phobius details TIGR01131: ATP synthase F0, A subunit" amino acids 5 to 238 (234 residues), 224 bits, see alignment E=1.2e-70 PF00119: ATP-synt_A" amino acids 30 to 235 (206 residues), 224.2 bits, see alignment E=9.1e-71

Best Hits

Swiss-Prot: 100% identical to ATP6_RHORT: ATP synthase subunit a (atpB) from Rhodospirillum rubrum (strain ATCC 11170 / ATH 1.1.1 / DSM 467 / LMG 4362 / NCIB 8255 / S1)

KEGG orthology group: K02108, F-type H+-transporting ATPase subunit a [EC: 3.6.3.14] (inferred from 100% identity to rru:Rru_A3246)

Predicted SEED Role

No annotation

KEGG Metabolic Maps

Isozymes

Compare fitness of predicted isozymes for: 3.6.3.14

Use Curated BLAST to search for 3.6.3.14

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q2RPA4 at UniProt or InterPro

Protein Sequence (241 amino acids)

>Rru_A3246 H+-transporting two-sector ATPase, A subunit (NCBI) (Rhodospirillum rubrum S1H)
MHSPVEQFAIKPLVSIQVAGVDVSFTNSSLLMLLTVGLAAAFFWNATARRTLIPGRLQSA
AEMLYEFVANMIRDNVGKEGMKYFPYILTLFVFVFLGNMLGMLPYSFTFTSHIAVTAALA
VGIFIAVTIIGFARHGFHYFRMFFPHGAPLLTAPLLIPIELISYLSRPFSLSVRLFANMT
VGHIMLKVLAGFVIMLGVVGGVVPFAVVLGVTVLEFFIAALQAYVFTILTCIYLNDAINM
H