Protein Info for Rru_A3164 in Rhodospirillum rubrum S1H

Annotation: hypothetical protein (NCBI)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 332 transmembrane" amino acids 21 to 38 (18 residues), see Phobius details amino acids 49 to 70 (22 residues), see Phobius details amino acids 77 to 97 (21 residues), see Phobius details amino acids 102 to 124 (23 residues), see Phobius details amino acids 140 to 166 (27 residues), see Phobius details amino acids 177 to 201 (25 residues), see Phobius details amino acids 227 to 246 (20 residues), see Phobius details amino acids 252 to 270 (19 residues), see Phobius details amino acids 277 to 302 (26 residues), see Phobius details amino acids 312 to 331 (20 residues), see Phobius details PF11449: ArsP_2" amino acids 90 to 297 (208 residues), 74.7 bits, see alignment E=4e-25

Best Hits

KEGG orthology group: None (inferred from 100% identity to rru:Rru_A3164)

Predicted SEED Role

"Predicted manganese transporter, 11 TMS" in subsystem Transport of Manganese

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q2RPI6 at UniProt or InterPro

Protein Sequence (332 amino acids)

>Rru_A3164 hypothetical protein (NCBI) (Rhodospirillum rubrum S1H)
MTTLVLNSWKTAREIKGASRFPWQLGVLAVAIALVLSEGPAGDAARQALADAFLTVVPLV
ALAVAFGMALTRRLPMAGRLALPAWPIPLAALVLLVPFPRAAAVVLALGVAAGLGGAFLS
HLSAATAPRTDRPLERPWPGVVVALWAVMLLGGLALTLASALGFAVGEGGRFGLSSLGLP
MAFAIFGALAVLALWAIGPILGDRRPSVRPVPPLAPLARLMDDTNTLGAWVIAAFVTTQV
ALALGHPALADWLVFAAPLLPLIGVAFGLLPGVGPQILVATLVVGGGTPVSMLIATVLAA
GLSVGAPSTTTARLVPLGLGLLGGYGAYALGW