Protein Info for Rru_A3153 in Rhodospirillum rubrum S1H

Annotation: conserved virulence factor protein (NCBI)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 850 901 PF10139: Virul_Fac" amino acids 24 to 889 (866 residues), 1081.7 bits, see alignment E=0

Best Hits

KEGG orthology group: None (inferred from 100% identity to rru:Rru_A3153)

Predicted SEED Role

"Putative virulence factor"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q2RPJ7 at UniProt or InterPro

Protein Sequence (901 amino acids)

>Rru_A3153 conserved virulence factor protein (NCBI) (Rhodospirillum rubrum S1H)
MADTTKDLGRAIDALDKGAEKARLWIDALRESAPSVSLQAESLSNAARRARLACKRLAHA
ADRNNCVGVFGPSQAGKSYLVSALARTKGGRLTIRLGAESRDFLREINPPGDRESTGLVT
RFTIHANDIDPAYPVELRLLSETDVVKILANSFFQDFDPNSMTIAPLEEDDIRAALREAA
AAATAKPAAHLTEIALFELDEYFHQNFKKRIGALDRADFWAGLIRHGGRLPIAARARLFS
VLWGRVEAFTKLYIHLAGALEAIGNPEEARAAISGLIPREIGSPPRANSIIDVAVLNRLG
TSEDGSDPIALLPVVAGKSGAPVSLPRATLTALIAEVRLVIEHQPWPFFEHTDLLDFPGA
RSRLKLLQMPKEAEEEARQTRELYLRGKIAYLFQRYTDELELTSMLLCMPPSVAEVKDLA
MMVRSWINVTHGETPAKRKAVRNALFLVLTKHDLEFLEKGGETPDSRAGKWDRRLHASLL
ELYGKDDWPGDWDGKPFDNTVFLRNPSMKQVHLMRYRDEATLDEEGPVDSPVFREYRDAF
LASADVARHFADKTAVWDAAMTANDGGVAYLVDRLVAVLDPGLKRHQASERLATTARALE
EPLRAFHYAEGDEAKRAKDAALVDLRRRLFSQIRESDHRSFAALLAGLMADPAQVRGLYM
NVAEMREDELNEIADGAVADEPVVEDDDDPWAEAGADPVPAKKAAPPRRKDRPEVFASQV
MNQWAGGLRAFQRNEVALAVLGLSAATVGPIIDEMLVGANRLGLQERIAEAAREETRAVG
TRWSSVADRVTGIAANTINDFVAYLDYAALPVDQRPGVPEPPKERKRGIFTTASLKHPGP
VLGDEPEEIEKAFFLDWGVALRAFGCDNVGHAAGREISDEKNRELGAILDMIDVSWLVAA
E