Protein Info for Rru_A3006 in Rhodospirillum rubrum S1H

Annotation: Protein of unknown function DUF839 (NCBI)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 687 transmembrane" amino acids 73 to 92 (20 residues), see Phobius details PF05787: PhoX" amino acids 109 to 647 (539 residues), 536.7 bits, see alignment E=4.3e-165

Best Hits

KEGG orthology group: K07093, (no description) (inferred from 100% identity to rru:Rru_A3006)

Predicted SEED Role

"Putative phosphatase"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q2RPZ4 at UniProt or InterPro

Protein Sequence (687 amino acids)

>Rru_A3006 Protein of unknown function DUF839 (NCBI) (Rhodospirillum rubrum S1H)
MDDHDVPLSVRAADDRENIGVNPTSGARFDTMMAARGVAASDARENLGVNPSTEPSIDDL
VAARFGRRAALKGLSAAATLAMLAGTGAVGALSPRSARAATPTGGSSLTFKELPHGYDED
HHVAEGYQAQVLIRWGDKVLPGAPAFAPQALTAAAQSAQFGYNNDYVGYFPLPRGSQSSD
HGLLAVNHEYTDRQLMFPGIGPEDQDKQTNEMIDVELAAHGHSVIEIKREGERWSVVEDS
PYNRRLTALATPFLVTGPAAGHDRLKTKADPTGTRVIGTLNNCAGGTTPWGTVLIAEENV
HQYFRGTGAATAESANYKRMGITDKPAYDWARFHDRFDVSKELNEANRFGWMVEFDPYDP
ASVPKKRTALGRFKHEAATTILNADGRLAVYCGDDEAFEYVYKFITTGKVDPANPAANAD
LLDDGVLFVGKFSADGALRWIPLVHGQGPLTAANGFNSQADVLIEARRAADLLGATPMDR
PEDVEPNPVTGTVFMNLTNNTKRKDDRIDAANPRAGNGHGHVIEMIPPGERGKRDHAASE
YTWDIFLLAGNPANPKDGARYGAGGVSESGWLSCPDNMAFDNQGRIWISTDGAPKAGIAD
GIWAADVEGPGRAVTRHFYSAPRGAEMCGPCFTPDNTTFFVAVQHPGDEAKATYENPVTR
WPDFKPDLPPRPSVVAITRKAGGFIGV