Protein Info for Rru_A2879 in Rhodospirillum rubrum S1H

Annotation: hypothetical protein (NCBI)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 339 signal peptide" amino acids 1 to 18 (18 residues), see Phobius details transmembrane" amino acids 41 to 63 (23 residues), see Phobius details amino acids 82 to 97 (16 residues), see Phobius details amino acids 118 to 142 (25 residues), see Phobius details amino acids 151 to 175 (25 residues), see Phobius details amino acids 196 to 200 (5 residues), see Phobius details amino acids 206 to 229 (24 residues), see Phobius details amino acids 238 to 262 (25 residues), see Phobius details amino acids 285 to 306 (22 residues), see Phobius details PF03706: LPG_synthase_TM" amino acids 11 to 298 (288 residues), 142.3 bits, see alignment E=1.2e-45

Best Hits

KEGG orthology group: None (inferred from 100% identity to rru:Rru_A2879)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q2RQB9 at UniProt or InterPro

Protein Sequence (339 amino acids)

>Rru_A2879 hypothetical protein (NCBI) (Rhodospirillum rubrum S1H)
MAKPLSVVLTLAKLAVSAGILWVIFSGIDTQGLWARLDRDVALVGGVALVLLQIQALGGG
WRWTLVLRAHDRRVGFAQAWRNVLLGLFVNQAMPSTIGGDTVRVWNGTRLGLPLGLAARS
VVVDRVCSFLGLILLCALGLPALRRQASDPLVAAGLTTLVIGGLCCLGALLALRFLPGAV
ARARGVAPFVALSRSAWSVLLGRTTALPILGLLLFPHVIDILVVWLFAGAIGSPATLWQI
ALVFPPAILVAAVPLSIAGWGLREGALVLGFAIIGLPADQAVTVSLLYGLSAVITGVIGG
AIWALGDRDGLGALRRGGREALAETRAPAAREKDAQSGG