Protein Info for Rru_A2854 in Rhodospirillum rubrum S1H

Annotation: hypothetical protein (NCBI)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 585 signal peptide" amino acids 1 to 20 (20 residues), see Phobius details transmembrane" amino acids 519 to 537 (19 residues), see Phobius details PF13432: TPR_16" amino acids 5 to 68 (64 residues), 17.3 bits, see alignment E=3.4e-06 amino acids 75 to 136 (62 residues), 20.1 bits, see alignment E=4.5e-07 amino acids 108 to 170 (63 residues), 27.3 bits, see alignment E=2.6e-09 amino acids 142 to 204 (63 residues), 19.6 bits, see alignment E=6.5e-07 amino acids 176 to 237 (62 residues), 18.7 bits, see alignment E=1.3e-06 amino acids 210 to 273 (64 residues), 20.9 bits, see alignment E=2.5e-07 PF14559: TPR_19" amino acids 79 to 143 (65 residues), 25.5 bits, see alignment E=7.9e-09 amino acids 147 to 212 (66 residues), 31.7 bits, see alignment E=9.7e-11 amino acids 215 to 276 (62 residues), 32.6 bits, see alignment E=4.9e-11 PF13374: TPR_10" amino acids 141 to 166 (26 residues), 17.6 bits, see alignment (E = 1.9e-06) PF13181: TPR_8" amino acids 242 to 272 (31 residues), 13.1 bits, see alignment (E = 5.7e-05)

Best Hits

KEGG orthology group: None (inferred from 100% identity to rru:Rru_A2854)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q2RQE4 at UniProt or InterPro

Protein Sequence (585 amino acids)

>Rru_A2854 hypothetical protein (NCBI) (Rhodospirillum rubrum S1H)
MNPRLALALKLLEAGLVESAAIPVAQALERDPDDPRAHHLAGLIARRGGDGALALAAFTR
GLAVAADDAPLRIERAGLLLDLGRAEEALADLAVALALAPDHQAVLSTQGRALIDLGRPG
EALAPLRRARALAPDDVAPAHNLGRALLALDRPDEALPLLEAAVARAPGAIDPRADLAEA
LRRLDRPGDAAQLLRAVLADAPGRADLADALAGALLAAGAVDESVAVLRASLDKAPTHGA
GWVNLAAALIETGALDEATAAADRALALDPDDADAKVNRAFARCLADDYEQGFADYAHRW
RTAAFQRPYPPVTAPPWAGEPLGEGTLLVRGEQGLGDQIMAARFLPWLSKRPDRPRRIVF
ECHPCLHRLLAEGLEAGIDLLAMGRPPPPVAAWIGALDLARMAGVTAGVMPVDVPYLKAR
PPVPPLAPPLPPGGRGRLGLVWAGKTRPRDRSCPLEPLAGLCVDQGWTVHALQLGPRRAD
LAGLPAGLGVIDEGDRLGDMAATASVMAGLDLVVAVDTAVAHLAGALGLPCALLLLATPD
WRWGQKASRTVWYPSLRLFRQPHPGDWDGAFDAVRRAFAQGWPLS