Protein Info for Rru_A2840 in Rhodospirillum rubrum S1H

Annotation: flagellar motor switch protein FliM (NCBI)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 384 TIGR01397: flagellar motor switch protein FliM" amino acids 67 to 379 (313 residues), 303.1 bits, see alignment E=1.1e-94 PF02154: FliM" amino acids 96 to 287 (192 residues), 219.4 bits, see alignment E=4.1e-69 PF01052: FliMN_C" amino acids 308 to 378 (71 residues), 57.6 bits, see alignment E=9.5e-20

Best Hits

Swiss-Prot: 69% identical to FLIM_CAUVN: Flagellar motor switch protein FliM (fliM) from Caulobacter vibrioides (strain NA1000 / CB15N)

KEGG orthology group: K02416, flagellar motor switch protein FliM (inferred from 100% identity to rru:Rru_A2840)

Predicted SEED Role

"Flagellar motor switch protein FliM" in subsystem Bacterial Chemotaxis or Flagellar motility or Flagellum

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q2RQF8 at UniProt or InterPro

Protein Sequence (384 amino acids)

>Rru_A2840 flagellar motor switch protein FliM (NCBI) (Rhodospirillum rubrum S1H)
MVPADDDPKKEVSPDDEKAMMAEWESMVGGEDEPAADGDEAGGAAEWETMLADEGGEGEG
GMTGSARVLNQDEIDSLLGFSEAEDSGTDKSGIQAIISTALVSYERLPMLEVVFDRLVRM
MSTSLRNFTSDNVEVSLDNIQSYRFGDYLNSIPLPAMLSVFKAEEWDNYGLLTIDSSMIY
SIVDVLLGGRRGTAAMRIEGRPYTTIERNLVERLVHVVLADLSAAFDPLSPVTFRFDRLE
TNPRFATISRPSNAAIVAKLRIDMEDRGGRLDMLIPYATLEPVRELLLQMFMGEKFGRDS
IWETHLAEEMWSTEVQMDAILDEVYMPLNKILSMEVGSQILFNATPDSTVQLRCGDVPMF
DGKMGRKGQNIAIRVDSKHNRAKS