Protein Info for Rru_A2487 in Rhodospirillum rubrum S1H

Annotation: BsuBIPstI restriction endonuclease-like (NCBI)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 416 PF17728: BsuBI_PstI_RE_N" amino acids 68 to 233 (166 residues), 99.8 bits, see alignment E=1.3e-32 PF06616: BsuBI_PstI_RE" amino acids 245 to 404 (160 residues), 165.6 bits, see alignment E=6e-53

Best Hits

KEGG orthology group: None (inferred from 100% identity to rru:Rru_A2487)

Predicted SEED Role

"BsuBI-PstI family restriction endonuclease (PF06616)"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q2RRF8 at UniProt or InterPro

Protein Sequence (416 amino acids)

>Rru_A2487 BsuBIPstI restriction endonuclease-like (NCBI) (Rhodospirillum rubrum S1H)
MDLFSRLEGAKEPKETKETKEAKEPKEPKEPKEPKEPKEPKETKEAKEPPAFAPETPAAP
LPPYASRDLIAARLPLIFPAGTPNRTYCVRDLAASTVFAALYIGAVEGRGCFLGPVHVYR
MTNEQALLADEADRLAYGLAVLRKGGGISGSRWYADNTREPIRDETLRDGLVAIGAVIRR
GDLPTTSGQPRYALKAAFAALFDPALDGPALDAAIAAFQAAHLSRSALARVAIMRAGATA
GAEGVLVRFPSGETRQLAPGPSSIIAQAVVEVFAPRFLAAPAVLWLSESGNKVVLRDDAL
AHAIGLRIEADKTLPDLILADLGPKDPLLVFVEVVATDGALSPQRQRAIHALTEAAGFSP
AQVLFLTAYQDRQSPGFRKTVGQLGWGGFVWFASEPERLLRLHDSAGDPRTLAELL