Protein Info for Rru_A2348 in Rhodospirillum rubrum S1H

Annotation: Glycosyl transferase (NCBI)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1300 1400 1500 1600 1700 1837 PF13432: TPR_16" amino acids 145 to 205 (61 residues), 31.8 bits, see alignment (E = 1.5e-10) amino acids 220 to 278 (59 residues), 25.3 bits, see alignment (E = 1.6e-08) amino acids 284 to 345 (62 residues), 19.7 bits, see alignment (E = 9.1e-07) amino acids 421 to 482 (62 residues), 20.6 bits, see alignment (E = 4.6e-07) amino acids 526 to 574 (49 residues), 18.3 bits, see alignment (E = 2.6e-06) PF14559: TPR_19" amino acids 256 to 318 (63 residues), 35.4 bits, see alignment (E = 9.9e-12) PF13431: TPR_17" amino acids 540 to 572 (33 residues), 22.4 bits, see alignment (E = 9e-08) PF13844: Glyco_transf_41" amino acids 982 to 1151 (170 residues), 63.5 bits, see alignment E=1.1e-20 PF13641: Glyco_tranf_2_3" amino acids 1205 to 1436 (232 residues), 71.4 bits, see alignment E=9.6e-23 PF00535: Glycos_transf_2" amino acids 1208 to 1325 (118 residues), 71.8 bits, see alignment 6e-23 PF13506: Glyco_transf_21" amino acids 1275 to 1417 (143 residues), 22.8 bits, see alignment 5.1e-08 PF13692: Glyco_trans_1_4" amino acids 1662 to 1799 (138 residues), 85.3 bits, see alignment 4.6e-27 PF00534: Glycos_transf_1" amino acids 1711 to 1807 (97 residues), 29.6 bits, see alignment 4.5e-10

Best Hits

KEGG orthology group: None (inferred from 100% identity to rru:Rru_A2348)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q2RRU7 at UniProt or InterPro

Protein Sequence (1837 amino acids)

>Rru_A2348 Glycosyl transferase (NCBI) (Rhodospirillum rubrum S1H)
MPDTPAFTLVAHLEAGDWDALRRALSQKETPASLLTQTLAEGRCPETPPPPGGAFLPSYS
LKRSLGDPSAVVARLCQIARETRAAGNDPLAADLYRTALAFDPRCAEASLALAWDSYARG
DRCGAVDRAERAVQATPNDAEAATTLGWLYWEAGRGEAATRTLCAAVDRHPRQATAYWYL
GHICARQGRLAEAERLLRHALALAADTDAPNGEIAASLSWVLADLGRLDEALTLAHDTAR
RDPAPRHLAHLGRLLTQKGEYEAALVLLDRATAERPGDWAATADLATALSRTGRGREALT
LIETALAAAPDERRLALRQATLLRDGGAHPQAALIAAQIVERWPDWGEGWFLRGQIKRDD
GQDEEALDCFARAQACDPSLIAAILERSRLLLRLGRAEAAAGLMEDLLREAPGHPAARKH
LAWALIGQRKGAIARPQIHILLQSAPRAAELWTALSTALHQMGRLTTARLAARRARRLAP
TDCDALRHGAALELEAGDLSATSELCHRLLHLAPTLPAAHIMAGFAHQASGRLVAAERHA
EQAIALAPKDAEAWRCLGHLRHHQNRLAEAEEALHNAHALAPGRGDVLGQLAWVLVMDDR
LPEALIVMRKACDLTPESAERALEQAEMLALAGRPAEAIIAATRARDLGPSPLAAQALLA
RIHLSRGHIEAGDGDTAWAEAARCAATLLYRDPSHLAAAHVAVRLAAAGQPRAADLVALL
PSALHRRVLREGLEWVTGFGNAREATRLTRATRAAFPEDRDLTIACLYLETMAGQAPAAD
TARQLRQWGLEHAQSWGPLPPRPRLAATPGRPLHVAYLASRYHHALLSGILATHDRAVVV
PHLYTDDAEALPPDLRSRVIVHPLGGVDLAASCAANGIDVVVDTVGLHPFHGQAEVLRFL
RRRLAPSQWGWFGGWGPGSGLFDGLITDTVALPAAADHHDEDILALAGGQWSWTPPAVAP
AIGPLPSAQTGIITFGCAVRGFRISRSCLETWADLLAGMDNARLMILGRQAHDWEFRAGF
SRLLQACGIAPERVVYRFQQAYADHLHSFAGIDIALDTFPANGGLCLADALWMGVPVVTL
AGTGLLAERQGASLLAAADCGDWIARSPADYLAIARKLAGDRQDLALIRHTLRDRLGASP
LLDARRITSQLEAAWLKARDAMAGITAAPDLKSRSQALAKRDLAVWLGRERSLTLPPSQG
ADDAPDLSVVIVLYNQAGLSLRTLIALADQQGVRFETIIVDNASTDETPALLARVRGATL
LRNEDNIGFLRAANQGAAVARGKHIVFLNNDVFLHRDALAAALRRLRADPSIGVVGGRVV
LIDGSLQEAGCMVFNDGSTAGYGRGEDPNLAEFRFLREVDYVSGAFLMLPRALWRALGGF
EPALAPAYYEDTDLCLRVHRAGFRVVYDPAVVLTHVEGGSTVTSDAAAAMIRRNRGAFLA
RHAEALRSRPSPAAARPLRDRWAPAPAPRVLVIDNGVPHSAGGAGNPRARLMIEALAGCH
VTFFPMWVRESDWAAVYRTLGAEVEVMLDQHATTLEDFLDHRQGLYDVLVVSRPPNMAIV
KAIGRRRPDLLKGMRLVYDAEALFALRDIAQAAITARPLPRTEARRRLRDELDLAAGADT
VLAVSRREARLFSAGGAAKVHLVSHALPAHPAPPGRDGRSGFLFLGALTPGSPNEDSLVW
LVESVLPALARRLPRPPPHLSILGECRSSRIAALAGEQVRLVGRVEDPAPWYDQAAVFVA
PTRFAAGIPLKVIEAAAAGLPVVATPLLARQLGWSTGDYLLAAGDAEGFAAAMAALYTDG
ALWRRIRDGALARVSTENAPDRFRDTLREAVLGRGIG