Protein Info for Rru_A2294 in Rhodospirillum rubrum S1H

Annotation: Alpha amylase, catalytic region (NCBI)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 542 PF00128: Alpha-amylase" amino acids 14 to 452 (439 residues), 456.4 bits, see alignment E=1.5e-140 PF11941: DUF3459" amino acids 438 to 512 (75 residues), 34 bits, see alignment E=3.3e-12

Best Hits

KEGG orthology group: K01187, alpha-glucosidase [EC: 3.2.1.20] (inferred from 100% identity to rru:Rru_A2294)

Predicted SEED Role

"Maltodextrin glucosidase (EC 3.2.1.20)" in subsystem Maltose and Maltodextrin Utilization (EC 3.2.1.20)

MetaCyc Pathways

KEGG Metabolic Maps

Isozymes

No predicted isozymes

Use Curated BLAST to search for 3.2.1.20

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q2RS01 at UniProt or InterPro

Protein Sequence (542 amino acids)

>Rru_A2294 Alpha amylase, catalytic region (NCBI) (Rhodospirillum rubrum S1H)
MSGQEWWKRAVIYQIYPRSFQDADGDGIGDLAGIAQRLDYLSWLGVDAIWISPFYTSPMK
DFGYDIQDYRDVDPIFGTLADFDALAARARALGLKLILDFVPNHTSDRHPWFLESRQSPA
SAKRDWYIWRDPAADGGPPTNWLAEFGGSAWEYDEASGQYYYHAFLKEQPDLNWRNPEVR
AAMYDAMRFWLERGVDGFRVDVMWHLIKDDQFRDNPPNPARPPNAGPANALIPLYTADRP
EVHDIVREMRAVVDAYPERVLIGEIWLPTDRLVTYYGHDLRGAHLPFNFQLIGAAWDAGV
IKEIVGDYEKALPRGGWPNWVMGNHDKGRIASRLGPRQARLAMLLLLTLRGTPTLYYGDE
IAMRDVPIPPDRVCDPYEKNVPGLGLGRDPQRTPMQWEDAPQAGFTRASRSWLPIAADAS
TVNVAAQRAAPASMLTLVHRLIALRKAEAALTIGDYGALDAPERVVMFLRRVPGRRLLIA
LNLGESAQSLSLPGDSRQATTLLSTDPERPLGDLAPAFTLGGGEGIVVLLADRETAPPSP
AA