Protein Info for Rru_A2172 in Rhodospirillum rubrum S1H

Annotation: hypothetical protein (NCBI)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 345 transmembrane" amino acids 50 to 67 (18 residues), see Phobius details amino acids 87 to 104 (18 residues), see Phobius details amino acids 117 to 136 (20 residues), see Phobius details amino acids 147 to 163 (17 residues), see Phobius details amino acids 168 to 188 (21 residues), see Phobius details amino acids 199 to 218 (20 residues), see Phobius details amino acids 230 to 251 (22 residues), see Phobius details amino acids 264 to 284 (21 residues), see Phobius details amino acids 291 to 312 (22 residues), see Phobius details amino acids 318 to 335 (18 residues), see Phobius details

Best Hits

KEGG orthology group: None (inferred from 100% identity to rru:Rru_A2172)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q2RSC3 at UniProt or InterPro

Protein Sequence (345 amino acids)

>Rru_A2172 hypothetical protein (NCBI) (Rhodospirillum rubrum S1H)
MLFLTSAKAATVRAALDHWAGQGLLAPDEAARLSATITVQTVDWRRLSRYAFWAAVACLI
VSLGALAEDSRVMALLVRLFTFGPAQRFLGFALAAGAFFAYGVYRHRARPQTAFRNEAIL
FLGVVATAASLVNLGLWLDSGKGRDDLLFLLASLIYGAIALGLRSVLVWVFTLIALACWM
VAFTGIVSGWENYYLGLNWPLRFVLFSAAIVALAVPMARGARLAAFSRPTLSLGLLYLFL
SLWLLSIFGNYGDLEEWRTVSQLGMIPWSVLFAAVAVAAIWIGVRRDDGMLRGYGLIFLG
LNIYTRFFEVFWTSLHKGIFFALLGVSLWLLGTRAEKLWTLGRGR