Protein Info for Rru_A2122 in Rhodospirillum rubrum S1H

Annotation: hypothetical protein (NCBI)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 316 signal peptide" amino acids 1 to 27 (27 residues), see Phobius details transmembrane" amino acids 42 to 63 (22 residues), see Phobius details amino acids 71 to 90 (20 residues), see Phobius details amino acids 96 to 118 (23 residues), see Phobius details amino acids 121 to 140 (20 residues), see Phobius details amino acids 154 to 177 (24 residues), see Phobius details amino acids 198 to 224 (27 residues), see Phobius details amino acids 230 to 248 (19 residues), see Phobius details amino acids 260 to 278 (19 residues), see Phobius details amino acids 280 to 301 (22 residues), see Phobius details PF03706: LPG_synthase_TM" amino acids 8 to 287 (280 residues), 65.2 bits, see alignment E=3.5e-22

Best Hits

KEGG orthology group: K07027, (no description) (inferred from 100% identity to rru:Rru_A2122)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q2RSH3 at UniProt or InterPro

Protein Sequence (316 amino acids)

>Rru_A2122 hypothetical protein (NCBI) (Rhodospirillum rubrum S1H)
MKTARRLAAIVLVVAAVAFLAHHLYGAIRAGDLPDQVDWSLTAALAAAYGLVLALGGLNW
GLLLGGLGHALPRLTAVSILLVSQIGKYLPGNVGHLVGRVGLAKAYGVPVALAVLAVSGE
IALTLLTAVLVCAIGLLFAPDLVGLTGGVGQPGWIGFAILGASGLVLVGLMALPRLVPSL
PAVLRRRLEGAVAISPRTAFTFIALQGGQFVVQGGIVGGLAVALGEPFPPLAQTTTLFAV
AWVLGFLLPGAPGGLGVREALLVAGFAPLLGPGPAVALSLLLRLVTVLGDGMGFVIGSLL
ARRIRLRRECAGDQGA