Protein Info for Rru_A2118 in Rhodospirillum rubrum S1H

Annotation: ATPase (NCBI)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 275 PF13614: AAA_31" amino acids 16 to 63 (48 residues), 34.1 bits, see alignment 5.4e-12 PF09140: MipZ" amino acids 16 to 270 (255 residues), 350.4 bits, see alignment E=1.2e-108 PF10609: ParA" amino acids 16 to 64 (49 residues), 28.5 bits, see alignment 2.1e-10 PF01656: CbiA" amino acids 17 to 107 (91 residues), 40.8 bits, see alignment E=4.1e-14

Best Hits

KEGG orthology group: K03496, chromosome partitioning protein (inferred from 100% identity to rru:Rru_A2118)

Predicted SEED Role

"ATPases"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q2RSH7 at UniProt or InterPro

Protein Sequence (275 amino acids)

>Rru_A2118 ATPase (NCBI) (Rhodospirillum rubrum S1H)
MGLEQDDEGGARRACVIVIGNQKGGSGKSTVAMHLVVSLARAGLRTGSIDLDAGQATLTR
YLENRRAFAEKRGLDLPSPEHVPMVPGTSLEADIRRLEHSMLAFHEEVDVVVIDTPGSDT
ALNRAAHALADVLITPLNDSFIDLDVMARIDGDSMTITGPSPYAAAVWEAKQARARRDGT
SMRWIVMRNRLSHLDARNKRDMEDALNDLSRRIGFSVVPGLGERVIYRELFLNGLTLLDL
KDKGTGVDISMSHVAARQELRALLAAIGMPKSIGL