Protein Info for Rru_A2096 in Rhodospirillum rubrum S1H

Annotation: Cell divisionFtsK/SpoIIIE (NCBI)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 726 PF17854: FtsK_alpha" amino acids 215 to 317 (103 residues), 91.5 bits, see alignment E=5e-30 PF01580: FtsK_SpoIIIE" amino acids 325 to 544 (220 residues), 242 bits, see alignment E=8.1e-76 PF09397: FtsK_gamma" amino acids 655 to 714 (60 residues), 88.2 bits, see alignment 3.4e-29

Best Hits

KEGG orthology group: K03466, DNA segregation ATPase FtsK/SpoIIIE, S-DNA-T family (inferred from 100% identity to rru:Rru_A2096)

Predicted SEED Role

"Cell division protein FtsK" in subsystem Bacterial Cell Division or Bacterial Cytoskeleton or Bacterial RNA-metabolizing Zn-dependent hydrolases

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q2RSJ9 at UniProt or InterPro

Protein Sequence (726 amino acids)

>Rru_A2096 Cell divisionFtsK/SpoIIIE (NCBI) (Rhodospirillum rubrum S1H)
MSAQVFQPGVDTAPMTSAQGTKAEEFNLWCAMNNRPFALRLSGWQDGSREWCIEADRGRP
EAAAIWGTGTDEEAVATAIAYAFVAGIEWAEAERALQDADDEAEEGRGEPEVEWLDEDEF
EERTDALRAGPPPLSTKIAGSRVAGQITVRLPEPDRPDFGVTESSVPEAEALVVDDLEPA
PEEILEPAVAQPVIRSPLALEAEPLPDAILPPYHLPAVDLLGGGDPKDAIEEESNENELA
EQAAKLETVLRNFRVRGEIMEVRPGPCVTLFELEPVPGTKSSTIINLADDIARSMSAVTA
RIALVPGRSVIGIELPNAVRETVYLKEILASEAWKTSKAKLPMALGKNIGGEPVVVDLAR
MPHLLIAGTTGSGKSVGINAMILSLLYHLPPEQCRLIMVDPKMLELSVYDDIPHLLTPVV
TDPRKAVAALKWVVREMESRYKAMSLLGVRNLDGYNARVTDLNARGEQVTSRVQVGFDKE
RREPVFEDRIVTLLPLPFIVVVVDEMADLMLVAGKEIETLIQRLAQMARAAGIHLIMATQ
RPSVDVITGTIKANFPTRISFQVTSKIDSRTILGESGAEQLLGQGDMLFMQAGGRISRVH
GPFVSDQEVEEVVAHLRTQAQPDYVYSVTEEDDDEEADYPGAGAIDEAISEEGDDGDLYS
QALAVILREGKASVSFIQRHLQIGYNRAARLVERMENEGVISPPNHVGKREILVSARQYF
AGRGDD