Protein Info for Rru_A1931 in Rhodospirillum rubrum S1H
Annotation: Ferredoxin--nitrite reductase (NCBI)
These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.
Protein Families and Features
Best Hits
KEGG orthology group: K00366, ferredoxin-nitrite reductase [EC: 1.7.7.1] (inferred from 100% identity to rru:Rru_A1931)MetaCyc: 45% identical to assimilatory sulfite reductase (ferredoxin) (Allochromatium vinosum)
Sulfite reductase (ferredoxin). [EC: 1.8.7.1]
Predicted SEED Role
"Sulfite reductase [NADPH] hemoprotein beta-component (EC 1.8.1.2)" in subsystem Cysteine Biosynthesis (EC 1.8.1.2)
MetaCyc Pathways
- superpathway of L-methionine biosynthesis (by sulfhydrylation) (12/12 steps found)
- superpathway of sulfate assimilation and cysteine biosynthesis (9/9 steps found)
- superpathway of sulfur amino acid biosynthesis (Saccharomyces cerevisiae) (9/10 steps found)
- assimilatory sulfate reduction I (4/4 steps found)
- assimilatory sulfate reduction IV (4/4 steps found)
- assimilatory sulfate reduction III (3/3 steps found)
- assimilatory sulfate reduction II (2/3 steps found)
- nitrate reduction II (assimilatory) (1/2 steps found)
- nitrate reduction VI (assimilatory) (1/2 steps found)
KEGG Metabolic Maps
Isozymes
No predicted isozymesUse Curated BLAST to search for 1.7.7.1 or 1.8.1.2 or 1.8.7.1
Sequence Analysis Tools
PaperBLAST (search for papers about homologs of this protein)
Search CDD (the Conserved Domains Database, which includes COG and superfam)
Predict protein localization: PSORTb (Gram-negative bacteria)
Predict transmembrane helices and signal peptides: Phobius
Check the current SEED with FIGfam search
Find homologs in fast.genomics or the ENIGMA genome browser
See Q2RT14 at UniProt or InterPro
Protein Sequence (556 amino acids)
>Rru_A1931 Ferredoxin--nitrite reductase (NCBI) (Rhodospirillum rubrum S1H) MYRYDEFDAAIVADRISEFRDQVNRRLSGELDEEAFRPLRLMNGVYLQLHAYMLRVCIPY GEINATQLRRLGAIAQRYDRGYGHFTTRQNIQFNWVALSDIPAVLEELAEVGMHAIQTSG NCIRNTTTDPLAGVAADEVEDPRPWAELIRQWSTFHPEFTFLPRKFKVAITGASHDRAAI RFHDIGLELAPIGGGEIGFKVFVGGGMGRTPRLGRLLRDDLPKQHLLSYIEAILRVYNRQ GQRENKYKARIKILVDSLGVEAFRAEVDAEWEAMGRATIDVPEAEIARIQSYFVPQDSAP EDGGLAASRAITKRRASDPAFAGWLDANVHAHKVAGHAGVTISLKPAGGIPGDATTAQLE TIADLAERYSKGLLRVTHEQNLLLPHVRQEDLPALWAALVAAGLETANVGRIGDIISCPG LDYCSLATARSIPIAQALSARFADPARLRDIGPITLNISGCINACGHHHAGNIGILGLEK TGNEAYQLVLGGAADETAAIARITGQGFSADAIVGAVETVVDTYIGLRQDGETFIETFRR VGVTPFKEALYGSVAA