Protein Info for Rru_A1675 in Rhodospirillum rubrum S1H

Annotation: Cytochrome c assembly protein (NCBI)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 292 transmembrane" amino acids 23 to 45 (23 residues), see Phobius details amino acids 57 to 76 (20 residues), see Phobius details amino acids 84 to 106 (23 residues), see Phobius details amino acids 115 to 135 (21 residues), see Phobius details amino acids 148 to 176 (29 residues), see Phobius details amino acids 202 to 224 (23 residues), see Phobius details amino acids 239 to 257 (19 residues), see Phobius details amino acids 267 to 287 (21 residues), see Phobius details PF01578: Cytochrom_C_asm" amino acids 84 to 290 (207 residues), 49 bits, see alignment E=3e-17

Best Hits

KEGG orthology group: None (inferred from 100% identity to rru:Rru_A1675)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q2RTS0 at UniProt or InterPro

Protein Sequence (292 amino acids)

>Rru_A1675 Cytochrome c assembly protein (NCBI) (Rhodospirillum rubrum S1H)
MAPTLAGPNVAGDCFPGASGCIVLPMSGSLSLHIAAFLALLPAAFTPLRQTPGRDGLFWG
TLGVAIIGALVVSIVPSLRQGMWSTSFSSALWVSIAATLLLFSELCFRHQAAWRLTPVLM
PYLIALGAMATIWEGAEGAPLADHAPAFWTVLHIVIAVLTYGMLTLGAVAALAGFLQERA
LKARRPTSLTRRLPAAAEADRLSWILLYTSEWVLGAGLLTGMAVEYLETGAILQPDHKSM
LSSLAFLVIGGLILARSRWGVRGRVGARVVLLAYLLLTLAFPGVKFVSDVLL