Protein Info for Rru_A1545 in Rhodospirillum rubrum S1H

Annotation: Putative diguanylate cyclase (GGDEF domain) (NCBI)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 212 TIGR00254: diguanylate cyclase (GGDEF) domain" amino acids 40 to 201 (162 residues), 116.1 bits, see alignment E=6.8e-38 PF00990: GGDEF" amino acids 42 to 199 (158 residues), 109.4 bits, see alignment E=8.2e-36

Best Hits

KEGG orthology group: None (inferred from 100% identity to rru:Rru_A1545)

Predicted SEED Role

"FOG: GGDEF domain"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q2RU50 at UniProt or InterPro

Protein Sequence (212 amino acids)

>Rru_A1545 Putative diguanylate cyclase (GGDEF domain) (NCBI) (Rhodospirillum rubrum S1H)
MTSQEAKTIEGLKADLARLREILSITEDNLRASQNEVLRLSTIDPLTSVLSRRHFMDIAD
QEISRARRYKRPLAVLAIELDNIKAINEVHGTERGDAVLVAVGAAVLRSLRATDFVGRTA
GSEFTVMLPETEHEGCMSLAERLVADLARAAAAEVGNTTPLPTVSIGATHFVREDVIFDT
VVQRVDQAMERAHAAGGNRTLYLGANQIEAEF