Protein Info for Rru_A1527 in Rhodospirillum rubrum S1H

Annotation: ABC transporter component (NCBI)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 559 TIGR03719: ATP-binding cassette protein, ChvD family" amino acids 5 to 557 (553 residues), 987.9 bits, see alignment E=1.4e-301 PF00005: ABC_tran" amino acids 24 to 195 (172 residues), 84.1 bits, see alignment E=2.1e-27 amino acids 344 to 477 (134 residues), 94.4 bits, see alignment E=1.5e-30 PF12848: ABC_tran_Xtn" amino acids 234 to 302 (69 residues), 48.1 bits, see alignment E=1.5e-16

Best Hits

Swiss-Prot: 62% identical to ETTA_HAEIN: Energy-dependent translational throttle protein EttA (ettA) from Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)

KEGG orthology group: None (inferred from 100% identity to rru:Rru_A1527)

Predicted SEED Role

"ABC transporter, ATP-binding protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q2RU68 at UniProt or InterPro

Protein Sequence (559 amino acids)

>Rru_A1527 ABC transporter component (NCBI) (Rhodospirillum rubrum S1H)
MASYQYVYVMKNLSKVYPGGKEILKGLSLSFLPGAKIGVLGPNGAGKSTVLRIMAGIDKE
FGGEAWAADGVKIGYLAQEPDLDPAKDVMGNVMDGVGPMKALLDRFEEVSAKFGEVVDDD
EMNALIAEQAEIQEKIDAADGWDLQRQVEIAMDALRCPPGEADVTKLSGGERRRVALCRL
LLSKPDMLLLDEPTNHLDAESVGWLEHFLQQYPGTVVAITHDRYFLDNAANWILEVDRGR
GIPYEGNYSTYLENKQKRLEQESREEGARDKTISRELEWIRQSPKARQAKSKARITAYEN
LVASAGSQKVESAQIVIPIAERLGGVVIEAEGLTKGFGDRLLIDDLTFRLPPGGIVGVIG
ANGAGKTTLFKMITGKDQPDSGAIRIGETVRLGYVDQSRDALDPNKTVWQEISDGQDELD
LGKRKIPSRAYVGQFNFKGSDQQKKVGQLSGGERNRVHLAKMLKSHANVLLLDEPTNDLD
VETLRALEDALLEFAGCAVVISHDRWFLDRIATHILSFEGDSHVEWFEGNFEAYEADKKR
RLGADADQPHRLKYKPLSR