Protein Info for Rru_A1496 in Rhodospirillum rubrum S1H

Annotation: Glycosyl transferase, group 1 (NCBI)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 339 PF13579: Glyco_trans_4_4" amino acids 45 to 142 (98 residues), 45.4 bits, see alignment E=2.2e-15 PF13439: Glyco_transf_4" amino acids 51 to 146 (96 residues), 42.3 bits, see alignment E=1.7e-14 PF00534: Glycos_transf_1" amino acids 160 to 298 (139 residues), 67.4 bits, see alignment E=2.3e-22 PF13692: Glyco_trans_1_4" amino acids 162 to 297 (136 residues), 57.7 bits, see alignment E=3.3e-19

Best Hits

KEGG orthology group: None (inferred from 100% identity to rru:Rru_A1496)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q2RU98 at UniProt or InterPro

Protein Sequence (339 amino acids)

>Rru_A1496 Glycosyl transferase, group 1 (NCBI) (Rhodospirillum rubrum S1H)
MKVLHIAKDYHPQGSGVARHIDGLVAACRPLGVEARVLTAGEGGLWRAVGAADVVHLHGA
RTACVARAALVARLLDRPMIYTPHCYYDHGSWPKRLAKRLWDRLVERPLVARAWATILLD
EIWRGDLTARGLSPHRTVVVPNCITPNHGAPGWTGGRLAGQPALLSIGRLDRVKRLDDMI
IALTFPGMESAVLHLVGEGADQGRLGALATLDGLGGRVIFHGGLDDETTARMRAGADLFL
LASEREGLPTVMLETLAVGLPILVSDIPANRALADALGWPALFAMGDQGALARGVLRWAG
RPVPALVRDRLAAGFTWAARAGEIVGLYHEAMAHKAGGR