Protein Info for Rru_A1344 in Rhodospirillum rubrum S1H

Annotation: Transcriptional Regulator, IclR family (NCBI)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 262 PF09339: HTH_IclR" amino acids 18 to 69 (52 residues), 53.5 bits, see alignment E=1.7e-18 PF01614: IclR" amino acids 136 to 258 (123 residues), 52.7 bits, see alignment E=4e-18

Best Hits

KEGG orthology group: None (inferred from 100% identity to rru:Rru_A1344)

Predicted SEED Role

"transcriptional regulator"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q2RUQ0 at UniProt or InterPro

Protein Sequence (262 amino acids)

>Rru_A1344 Transcriptional Regulator, IclR family (NCBI) (Rhodospirillum rubrum S1H)
MDQSEKPDRAADRLFVSSLDKAMRLLGAFSAERPEMGLGDLALAAGLDKSAAQRFAHTFH
SLGYLDKDPVTRRYRPSIKILDLTNAYLWANPLIRAAMPQLIDLRQKIGETVNLALLDGE
SIVYAIRLPNARTSFAATLIGRRAPALNTASGRVMIAGFDRQTRQACVETWPLTAHIPTT
LLDRPTILGLVEEAAEKGYAISENEILLNERDIAAPIRIMGGPRAAVQCSVSAMVWPRAR
IVADIAPALLDTANALSQTPLG