Protein Info for Rru_A0940 in Rhodospirillum rubrum S1H

Annotation: DNA repair protein RecN (NCBI)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 577 TIGR00634: DNA repair protein RecN" amino acids 1 to 560 (560 residues), 453 bits, see alignment E=1e-139 PF13476: AAA_23" amino acids 5 to 53 (49 residues), 30.7 bits, see alignment 7.7e-11 PF02463: SMC_N" amino acids 14 to 518 (505 residues), 58.3 bits, see alignment E=1.2e-19

Best Hits

KEGG orthology group: K03631, DNA repair protein RecN (Recombination protein N) (inferred from 100% identity to rru:Rru_A0940)

Predicted SEED Role

"DNA repair protein RecN" in subsystem DNA-replication or DNA repair, bacterial

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q2RVV4 at UniProt or InterPro

Protein Sequence (577 amino acids)

>Rru_A0940 DNA repair protein RecN (NCBI) (Rhodospirillum rubrum S1H)
MLSALSIRDVVLIERLDLAFGPGLGVFTGETGAGKSILLDSLSLALGARADSALVRKGAP
QLSVSAEFTLAADHPARALLGAADLGVDGSEPVVVRRVVTADGRSRAYVNDQPTSVGLLR
QLGQSMVEIHGQFESHGLLDPASHRGVLDGFAGADSGQPAGLLPAVEAAHATWKAAVTAR
RRAEADLARARAEEDLLRHTGTELEALAARPGEEEALAEERALLMNGEKLAEGLNGALGA
LSQPLPVETALRHAMRALERVAPMAGHRLDGVIEGLERASVEAAEAQAQLQAVIGALDMD
PRRLETVEERLFALRGLARKHGLTVDGLPALLEDIRRQIATLEGDEDLLGGLRKAEENAR
ATYVEAARALSRVRRQAAGALDRAVAAELPPLKLERARFVTTLEDLPEDQWGAAGLDRVA
FLVATNPGGDPGPIHKIASGGELARFMLALKVILAAGGDVPTLIFDEVDAGIGGATAAAV
GERLARLGQAVQVLVVTHSPQVAAMGQRHYRVLKSDDGKGGFGTGVDALSPAERIEEVAR
MLAGAHITDQARAAARSLLSGPGTRAAKAPPSAPRSS