Protein Info for Rru_A0746 in Rhodospirillum rubrum S1H

Annotation: hypothetical protein (NCBI)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 510 transmembrane" amino acids 113 to 135 (23 residues), see Phobius details PF13413: HTH_25" amino acids 23 to 84 (62 residues), 74.5 bits, see alignment E=4.8e-25 PF13464: RodZ_C" amino acids 430 to 496 (67 residues), 48.6 bits, see alignment E=6.3e-17

Best Hits

KEGG orthology group: None (inferred from 100% identity to rru:Rru_A0746)

Predicted SEED Role

"very large tegument protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q2RWE5 at UniProt or InterPro

Protein Sequence (510 amino acids)

>Rru_A0746 hypothetical protein (NCBI) (Rhodospirillum rubrum S1H)
MKTSVPDTSRAERAGGSGQVGALLRATRLRVGEPIARVAESLRIRQGYLQAIEEGRYQDL
PGAAYAVGFVRAYADHLGLHAEEVVRRFKDETQSMAPAATLEFPAPAGEGGVPAGALVAV
ALILAACAYGAWYWVSSAEKPVAELIPDIPDRLAALVGRSPGLPPGPSPAGEPLPVAPPQ
AGPSGENAPADPAMAGSPVETLMPGPDDEPRGATDPTSGLPLVSAFPVAPVTPIDQGATA
EAKPDAAAPEPQAEASSQPEPEVLVSHTPESPSGAPLPPPPRGNAVDEEPAPPPVVAAPP
KTPAEPAVTVVQRPEPARPAQPTPEPAKPAQPTPEPAKPAQPTPEPARPAPSTPPSPPAA
PAPSAAPSPQPAPPPAAGPAVSPPAPIAEAVAPPPPPPAEEATQAPRQESVVGQPASGEV
ARQAQTSRIVLKAASDSWIQLRRDGALVVRRLLRQGEVYAVSQPEGLTLNVLNAGALEVY
VDGVRAPSLGPVGGVRNDIRLDANRLKSGR