Protein Info for Rru_A0726 in Rhodospirillum rubrum S1H

Annotation: Major facilitator superfamily MFS_1 (NCBI)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 468 transmembrane" amino acids 19 to 43 (25 residues), see Phobius details amino acids 49 to 72 (24 residues), see Phobius details amino acids 93 to 110 (18 residues), see Phobius details amino acids 117 to 141 (25 residues), see Phobius details amino acids 161 to 182 (22 residues), see Phobius details amino acids 188 to 208 (21 residues), see Phobius details amino acids 237 to 261 (25 residues), see Phobius details amino acids 275 to 294 (20 residues), see Phobius details amino acids 303 to 320 (18 residues), see Phobius details amino acids 326 to 348 (23 residues), see Phobius details amino acids 369 to 394 (26 residues), see Phobius details amino acids 411 to 434 (24 residues), see Phobius details PF13347: MFS_2" amino acids 21 to 438 (418 residues), 267.9 bits, see alignment E=1.3e-83 PF07690: MFS_1" amino acids 35 to 384 (350 residues), 64.8 bits, see alignment E=7.1e-22

Best Hits

KEGG orthology group: None (inferred from 100% identity to rru:Rru_A0726)

Predicted SEED Role

"FIG097052: Sugar transporter"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q2RWG5 at UniProt or InterPro

Protein Sequence (468 amino acids)

>Rru_A0726 Major facilitator superfamily MFS_1 (NCBI) (Rhodospirillum rubrum S1H)
MTGPTGHAASGHLSAGRLLAYALPALALAIPTIPAFVLLPAFYAQDLGLGLAAVGTAMVV
ARLFDGLCDPLIGLMSDRHALPWPGGKRRRKPYVLAGALLAGLGLVQLFSPPAEPGIGYL
LGWSMVLSLGWTLVSVPYTAWGAELSGDYHERARITGWREGLAMVGVLVAGAVPALALAA
GLDRAGGLAWVAWAAILLGVPGLALLLLRVPEAPPPSSAPPALSWRDLRALAANGPFLRL
VVAWFLNGMATGLPAALFPLIVDHLLRGSEAARNGLILVYFLSGVVFIPLWLGLARRIGK
HRAWCVAMIVAIAAFVWVPLLGPGDVLAFGVICALTGMALGADLALPPAIQADVIDLDRL
RTGQRREGLFFALWAMAQKLALALAVGIGFWGLALAGFETSATTQSPQALTALVVIYALI
PIGLKVCAILVVWGHPLTLGRQKAIRRLLDRAAPAAPPGSEPRKPEIG