Protein Info for Rru_A0288 in Rhodospirillum rubrum S1H
Annotation: 2,5-didehydrogluconate reductase (NCBI)
These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.
Protein Families and Features
Best Hits
Swiss-Prot: 43% identical to DKGB_ECO57: 2,5-diketo-D-gluconic acid reductase B (dkgB) from Escherichia coli O157:H7
KEGG orthology group: K05885, 2,5-diketo-D-gluconate reductase [EC: 1.1.1.274] (inferred from 100% identity to rru:Rru_A0288)MetaCyc: 42% identical to methylglyoxal reductase DkgB (Escherichia coli K-12 substr. MG1655)
Aryl-alcohol dehydrogenase (NADP(+)). [EC: 1.1.1.91]; RXN0-7020 [EC: 1.1.1.91, 1.1.1.346]; Aldehyde reductase. [EC: 1.1.1.91, 1.1.1.346, 1.1.1.21]
Predicted SEED Role
No annotation
MetaCyc Pathways
- methylglyoxal degradation III (1/2 steps found)
- D-arabinose degradation V (1/3 steps found)
- superpathway of methylglyoxal degradation (4/8 steps found)
- L-ascorbate biosynthesis VIII (engineered pathway) (3/7 steps found)
- ketogluconate metabolism (3/8 steps found)
- detoxification of reactive carbonyls in chloroplasts (4/10 steps found)
- superpathway of pentose and pentitol degradation (9/42 steps found)
KEGG Metabolic Maps
- Fructose and mannose metabolism
- Galactose metabolism
- Glycerolipid metabolism
- Pentose and glucuronate interconversions
- Pyruvate metabolism
Isozymes
No predicted isozymesUse Curated BLAST to search for 1.1.1.21 or 1.1.1.274 or 1.1.1.346 or 1.1.1.91
Sequence Analysis Tools
PaperBLAST (search for papers about homologs of this protein)
Search CDD (the Conserved Domains Database, which includes COG and superfam)
Predict protein localization: PSORTb (Gram-negative bacteria)
Predict transmembrane helices and signal peptides: Phobius
Check the current SEED with FIGfam search
Find homologs in fast.genomics or the ENIGMA genome browser
See Q2RXQ2 at UniProt or InterPro
Protein Sequence (274 amino acids)
>Rru_A0288 2,5-didehydrogluconate reductase (NCBI) (Rhodospirillum rubrum S1H) MHRVSANGIAIPALGFGTWQIEGDDARVAVAEALALGYRHIDTARAYGNEAQVGAGIAQS GVPRGDIFLTTKIWTSEFKPEALTAALADSLAKLGTDYVDLTLLHWPNPEVPLADSLGAL AALQQEGLTLAIGVSNFPVALVEEAVAVCGRPLAVNQVEYHPFLDQSKVIEACRRHGMAV EAYSPLARGKVMEDATLRRIAEIYGRTPGQVALRWLIQQDGVIALPKAVRPEHAKANLGA LDFALSQSEMAEISALARPDGRLINPSWAPAWDD