Protein Info for Rru_A0267 in Rhodospirillum rubrum S1H

Annotation: Lytic transglycosylase, catalytic (NCBI)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

• PF01464: SLT
  • amino acids 410 to 512 (103 residues), 83.9 bits, E=3.2e-28

Best Hits

KEGG orthology group: None (inferred from 100% identity to rru:Rru_A0267)

Predicted SEED Role

"Soluble lytic murein transglycosylase precursor (EC 3.2.1.-)" (EC 3.2.1.-)

KEGG Metabolic Maps

• Ascorbate and aldarate metabolism
• Glycosaminoglycan degradation
• Nucleotide sugars metabolism
• Ubiquinone and menaquinone biosynthesis

Isozymes

Compare fitness of predicted isozymes for: 3.2.1.-

Use Curated BLAST to search for 3.2.1.-

Sequence Analysis Tools

See Q2RXS3 at UniProt or InterPro

Protein Sequence (574 amino acids)

>Rru_A0267 Lytic transglycosylase, catalytic (NCBI) (Rhodospirillum rubrum S1H)
MGMFPVGRWVRTVALGCCLMAGAGSAAAKPPGAVLGQADVARYRTIFALQDKGLWSDADR
EILGLEDPLLMGHVRYQRLMHPTAYRANADELRTWLATYVDHPCGQRLLRLAQRRGVAPP
IDPDAPLFGDLGSGEVGDGPGWGLEGVYPPGQRPTAQERWEIFLQALGAGQTLRMKELIT
GARNGVLADIDQDRMKAALAFAYFVEGRDEWAIAWAREAIARSGKRLPIAHWAGGLALWR
SGKPAEALGHFEEVIRAPGASPWLRSAGAFWAARSALRARHPERVSLLLERAAAEPRTFY
GLVALRALGRPMPFSWNAPKLSERAWERLERLPGARRAMALVQIGRSREAAEELTPLYAA
AGPELRDALLGATLALGLPTLALDIGRTDPRAGDVARFPLPPWSPDVGWSLDRALIYAFA
RQESAFDPQAVSPAGALGLMQLMPATASHVAGDRALADAEGGEVLFQPTVNLSLGQAYLA
ELLASSQIRGNLFFLATAYNSGPGRLAGWLREGRYDEDPLLFIESIGSRETRLFIERVLT
NYWAYRSRLDQSLSSLDAVAAGDWPRYQAAKPAR