Protein Info for Rru_A0208 in Rhodospirillum rubrum S1H

Annotation: SNF2 helicase-related protein (NCBI)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1209 PF04434: SWIM" amino acids 72 to 91 (20 residues), 22.9 bits, see alignment (E = 1e-08) PF04851: ResIII" amino acids 745 to 900 (156 residues), 24.9 bits, see alignment E=3.5e-09 PF00176: SNF2-rel_dom" amino acids 749 to 1029 (281 residues), 236.6 bits, see alignment E=6.4e-74 PF00271: Helicase_C" amino acids 1042 to 1151 (110 residues), 68.2 bits, see alignment E=1.4e-22

Best Hits

KEGG orthology group: None (inferred from 100% identity to rru:Rru_A0208)

Predicted SEED Role

"Snf2 family protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q2RXY2 at UniProt or InterPro

Protein Sequence (1209 amino acids)

>Rru_A0208 SNF2 helicase-related protein (NCBI) (Rhodospirillum rubrum S1H)
MPGFLTADLIRARLAPKDFQRGEEYLKDGRVLKAEWVADDEISGQVAGSAGRRYVQTITL
ENGLGGLSIVGYCSCPVGFACKHVAAVLLTLAREAEPVVPAWDGSFGARPAQAAVSEPTL
DPALAEWIAAVAGFEEVGDPEAYPPAIRHRLIYVVGPQGEGGVPQNGEGRSESRGGGRVS
AEIEVTLWSIAVLKDGQMSSVERRILSADALVRSPARPAYLRPSDLALVPRLAALRAPGG
GNALLLPQISGSELFAAMVASGRCRWGGPDGPTLYPGAARRAKLVWRSDGEGWQRPAIEP
EAMAPEAADPETAQPDIGQPYIAQPAIPEIGALDGEAVEAPTRTDPDDASPAPEDGESGQ
SPEAEAWDLRALPIEPPAYVDPRSGETGPLDLGLDPRLAARLLSAPPIPPTSVDAVRSRL
GALLPAAVPVLPAPIDAQPLSVAPQPILRLLALRAVPRMRGAEMPGETTQALVARPCFAY
DSVILPADSSEPAPLRMVGASLMRIERDFAAEGTALRQLDRIGPLRVAEALGRVRVEGGI
SADRLIAPPFLPRGEERERAVDFLRDGVPDLEEAGWRIEIDPDFPVRPVVADSQDWWGGL
NAVGGLEGTVGGWLSVGLGVTIDGERVDLLPALLTLLGEGEDLVEREEDELLYLPLGDGR
VLPVAVRRLRPIFHALHAVAVPDERAGPGVRLSGRDLGPLALLEEAGKPLGVVWEGAEGA
RDIARRLAVVGLREAVAPPKGLVGSLRAYQNEGLDWLQFLRANNLGGILADDMGLGKTLQ
TLAHILVEKESGRLNDPVLIVAPTSVLGAWRREAAQFAPGLRLVVLHGPERAAGFSQMAD
QDVVVTSYALVRHDLEVLKAQPWHMLVLDEAQTIRNPQTVQYKAVAALKARHRLFLTGTP
LENHLGDLWALMDLLMPGLLGDGATFRRVFRGPIEKRGDGPRRRALAVRVRPFILRRTKD
EVATDLPAKTEMIDMVELEGGQRDLYEAVRLAAHKAIREVLAEKGLARGRIHILAALTRL
RQVCCDPRLVKGGPRKPPPSAKLDRLEEMLRDLVDEGRRTLVFSAFPSMLALVEERLAAA
SIPWVSLTGETRDRDTPVTRFQSGAVPVFLISLKAGGTGLTLTAADTVIHYDPWWNPAVE
AQATDRAHRIGQDKPVFVHKLVAAGTVEERILALQDRKRGLLDGLFDGEAGPSSLLSEEV
IEEILRPLG