Protein Info for Rru_A0202 in Rhodospirillum rubrum S1H

Annotation: Phospholipase D/Transphosphatidylase (NCBI)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 803 transmembrane" amino acids 555 to 574 (20 residues), see Phobius details amino acids 599 to 623 (25 residues), see Phobius details amino acids 632 to 653 (22 residues), see Phobius details amino acids 681 to 702 (22 residues), see Phobius details amino acids 712 to 731 (20 residues), see Phobius details amino acids 743 to 763 (21 residues), see Phobius details PF13091: PLDc_2" amino acids 287 to 451 (165 residues), 31.6 bits, see alignment E=2.1e-11 PF09335: VTT_dom" amino acids 616 to 732 (117 residues), 85.5 bits, see alignment E=6.5e-28

Best Hits

KEGG orthology group: K01115, phospholipase D [EC: 3.1.4.4] (inferred from 100% identity to rru:Rru_A0202)

Predicted SEED Role

No annotation

MetaCyc Pathways

KEGG Metabolic Maps

Isozymes

No predicted isozymes

Use Curated BLAST to search for 3.1.4.4

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q2RXY8 at UniProt or InterPro

Protein Sequence (803 amino acids)

>Rru_A0202 Phospholipase D/Transphosphatidylase (NCBI) (Rhodospirillum rubrum S1H)
MITPPLAASPPRTAEDQEPPPFRLPGDAVWRRAHADRCAILIDGEAYFSALRQAVIAARR
EVLIIAWELHSKVDLLRDVEIDDQGLAADGWPVALQPLLLAALERNPDLHIHIVLWRVAV
LFLLEREVPFDLPKLWACHPRLHFVEDGDLPALASHHQKIVAIDGRLAFSGGLDLTTSRW
DTSRHLAHDPRRVNPDGAFGRPWHDVQVMVDGDAARALTEIARRRWERATAEPLPAHDIL
PAPAEAVSDPWPAAIAPDFTDIAVSIARTEHEYAGRSEVREVEAGFIATLENARDWLFIE
QQYLTSEAVGAVLERRLAEEDGPEVVIILPQGSDGPAQQAIMDKGRDDMLDRLRAADRHG
RFAAYWPIARDSDEGPNGAENAEAADPTDPTDPPAEPEGRGVYVHCKVMIADGTSLRIGS
ANMANRSMGLDTECDVILEDDGTADFHAKLFALACRLAGDLLGLDAQTVAARIEAEGSWI
KAIEALRDKPGNTLLPFTHRTPTLLADLAPDLRLCDPDRPLDPDTAAAMLIAPSIEELPP
APPPDPSGGRKRRKAWLALAAVVAVGGALGLAWTNPDLLKWADPHRLLDALGSWTSSPFA
PLVAVLGIVALGLVGFPVMVMILGTGMAFDPWIALIVNLLGVGASASLLFLIGRMAGRDA
IERFGGRAIPALSQRLAKQGAATVAALRNVPVMPFTLVNLVCGATHIRFRDYLVGTLLGM
APGIAALSFLGERVAASLRDPTWGSLLALAGVGITTAVLAHALQRWAEKREKTSGKPAGE
TGTTAEPETRSDAAARPAARPAE