Protein Info for Rru_A0150 in Rhodospirillum rubrum S1H

Annotation: hypothetical protein (NCBI)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 227 transmembrane" amino acids 20 to 45 (26 residues), see Phobius details amino acids 61 to 86 (26 residues), see Phobius details amino acids 112 to 137 (26 residues), see Phobius details amino acids 141 to 161 (21 residues), see Phobius details amino acids 182 to 209 (28 residues), see Phobius details PF07264: EI24" amino acids 5 to 203 (199 residues), 109.5 bits, see alignment E=1.2e-35

Best Hits

KEGG orthology group: None (inferred from 100% identity to rru:Rru_A0150)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q2RY40 at UniProt or InterPro

Protein Sequence (227 amino acids)

>Rru_A0150 hypothetical protein (NCBI) (Rhodospirillum rubrum S1H)
MLNALAKAFAQLGDPKVRRVLLISIGLTILGYIGLVAGLSFGLGAVQATDILWLDTVIDW
AAGGAVVVLALLFFPALVTLVSGLFLDGVADAVDARHYPDLGAPRAIPLSETVISTLQFT
LITVGLNILALPLYLLVPGVSLIAFYALNGYLISREFFELAAHRRMDRASALALRRQRRG
RLWALGAAIAFLTTIPVLNLLVPVIGTAAMVHMVEALRRSSPGMLRG