Protein Info for Rru_A0147 in Rhodospirillum rubrum S1H

Annotation: Major facilitator superfamily MFS_1 (NCBI)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 transmembrane" amino acids 62 to 83 (22 residues), see Phobius details amino acids 95 to 113 (19 residues), see Phobius details amino acids 130 to 147 (18 residues), see Phobius details amino acids 153 to 175 (23 residues), see Phobius details amino acids 196 to 215 (20 residues), see Phobius details amino acids 228 to 249 (22 residues), see Phobius details amino acids 270 to 290 (21 residues), see Phobius details amino acids 317 to 340 (24 residues), see Phobius details amino acids 362 to 385 (24 residues), see Phobius details amino acids 405 to 423 (19 residues), see Phobius details amino acids 430 to 450 (21 residues), see Phobius details amino acids 456 to 481 (26 residues), see Phobius details amino acids 493 to 512 (20 residues), see Phobius details amino acids 519 to 542 (24 residues), see Phobius details PF13000: Acatn" amino acids 66 to 204 (139 residues), 28.5 bits, see alignment E=5.9e-11

Best Hits

KEGG orthology group: K08218, MFS transporter, PAT family, beta-lactamase induction signal transducer AmpG (inferred from 100% identity to rru:Rru_A0147)

Predicted SEED Role

"AmpG permease"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q2RY43 at UniProt or InterPro

Protein Sequence (550 amino acids)

>Rru_A0147 Major facilitator superfamily MFS_1 (NCBI) (Rhodospirillum rubrum S1H)
MTPAPRPPWRLKLAPQGSGGALRRLARTCGLAAVGRLLLAPLPAGWREAVIAIGDSRVAR
MGFLGFSAGLPLLLVFSTLSVWLREAGIDRATVTMLSWAALAYSFKFVWAPLVDRLPLPV
LGRLGRRRSWLAFAQGLVCLGLVWTAAFDPAVALPMTALGAVIIAFAAATQDVVIDAYRI
EAAEPALQSLMSASYIAGYRVGMLVSGAGSLWLAALLDPGTGYDPAVWATVYRTMAAVMA
LGLITTLVIPEPERAPQTAEADDRSTADQLRFVGVIVLAAAAFLGGFVALDAPARGIAQG
LHAAGTGEPLAQALAGALRLIGALAGAGVAASALIALGLASREHLRRTYIAPIADFFGRY
GRLALLVLALIGSYRVADVAMGAIANVFYVDMGFTKEQIATYTKFWGLWATLLGGFLGGI
VALRVGVMGALFIGAVLAALSNLLFAALAGHPGETLWLMIAIVGDNLSAGMASAAFVAYL
SALTSVRFTAMQYALFSSLMTLLPKVLAGYGGSVVDTVGYASFFIGTAALGLPVLVLVAL
AARFAPPKSH