Protein Info for Rru_A0133 in Rhodospirillum rubrum S1H

Annotation: Glycosyl transferase, group 1 (NCBI)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 344 PF13439: Glyco_transf_4" amino acids 15 to 165 (151 residues), 76.9 bits, see alignment E=5e-25 PF13579: Glyco_trans_4_4" amino acids 40 to 154 (115 residues), 39.7 bits, see alignment E=1.6e-13 PF00534: Glycos_transf_1" amino acids 175 to 289 (115 residues), 53.3 bits, see alignment E=6.2e-18 PF13692: Glyco_trans_1_4" amino acids 182 to 289 (108 residues), 53.4 bits, see alignment E=8.9e-18 PF20706: GT4-conflict" amino acids 234 to 276 (43 residues), 27.5 bits, see alignment 3.8e-10

Best Hits

KEGG orthology group: None (inferred from 100% identity to rru:Rru_A0133)

Predicted SEED Role

"Glycosyltransferase"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q2RY57 at UniProt or InterPro

Protein Sequence (344 amino acids)

>Rru_A0133 Glycosyl transferase, group 1 (NCBI) (Rhodospirillum rubrum S1H)
MRITIVTDAWHPQPNGVVRVVDTVRQRLEHRDHEVQLIEPGLFRCMPCPTYPEIPLALLP
ARPLRKMIDEFRPEAVHIATEGPLGQAARSLCLKRGWPFTTAYHTKFPEYIHARTHLPLD
WLYTFMRRFHGPSSAVLCPSPSVRRELAGRGFANAIEWSHGVDTALFRPQPKDFIDLPRP
LFLYVGRVTVDKNLPAFLDLDLPGSKLVIGSGPQREGLMRRYPKAHFHIAFGDQELSRYF
AAADCFVFPSRTDTFGLVMLEALASGVPVAAFPVTGPRDVIGAAPVGVLDEDLARAAMGA
LTLDPLACRAYAEGFSWERVVDELLHALRPLPTAAAPLAQARIA