Protein Info for Rru_B0044 in Rhodospirillum rubrum S1H

Annotation: Glycosyl transferase, family 2 (NCBI)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 746 transmembrane" amino acids 715 to 733 (19 residues), see Phobius details PF13641: Glyco_tranf_2_3" amino acids 12 to 233 (222 residues), 41.3 bits, see alignment E=2.6e-14 PF00535: Glycos_transf_2" amino acids 15 to 133 (119 residues), 54.1 bits, see alignment E=2.8e-18 PF13692: Glyco_trans_1_4" amino acids 501 to 623 (123 residues), 33.4 bits, see alignment E=7.6e-12

Best Hits

KEGG orthology group: None (inferred from 100% identity to rru:Rru_B0044)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q2RMK5 at UniProt or InterPro

Protein Sequence (746 amino acids)

>Rru_B0044 Glycosyl transferase, family 2 (NCBI) (Rhodospirillum rubrum S1H)
MSTLPTPPRPRPVDIIIPVYKGLEETRLCLESVLATLPAADGLIVIDDHSPDPALVAYLK
DRAAGDRRIRLLHNPENLGFVGTVNRGMALEPERDVLLLNSDTEVAGDWVARLRAAAYAD
RRIGTVTPFSNNATICSWPRFCQDNPLPPGLDVAGVDRAFAAANPGLSIDIPTGVGFAFY
IRRDCLDEVGLFNAEAFGKGYGEENDFCRRAHHRGWRNVLAADTFVYHSGNVSFGVNQER
LDSAMRQLLALHPDYRRVVQLHINQDPAQNMRWRAALGILRQSALPVLLFVTHNHGGGTL
SHVHELAKALEGRAWGLLLTPGPRNTAVVTLPASLGGDALPFDLEQDWDGLLDLLRYAGV
NRLHLHHMLGVPERLLDLPEQLSIPFDFTAHDFHAGCPRVMLCGPGSRYCGQPEERALCD
ACLAQAPKTEAGDITSWRAAMVARLSRAERLFAPSADTANRLKRMLPALSFRAIPHPDAQ
GLATNAPPPLLRPCGTTEPLRILVLGALSRAKGADLVEATAREAARGDLPLEIHLLGYGY
RPLHRARGRLTAHGRYHPEEIAGHLERIAPHVAWLPAGWPETYSYTLSEVMAAGLPVVVS
DLGAPPERILGRPLSWVLPWNVDASTAAAFFGRLRAGEIPASPEAPALSPQSTPRVDFYR
EGYLAEVFPEKARARLPEREIGELIGQALDRAGARRRRLQCWGDLKVVRQRIWRSLITLL
AHPSLFPLVSRIPVSFQERLKRLIKG