Protein Info for Rru_B0017 in Rhodospirillum rubrum S1H

Annotation: Transcriptional Regulator, LysR family (NCBI)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 301 signal peptide" amino acids 1 to 30 (30 residues), see Phobius details PF00126: HTH_1" amino acids 11 to 70 (60 residues), 54.8 bits, see alignment E=7.5e-19 PF03466: LysR_substrate" amino acids 117 to 298 (182 residues), 77.2 bits, see alignment E=1.2e-25

Best Hits

KEGG orthology group: None (inferred from 100% identity to rru:Rru_B0017)

Predicted SEED Role

"Transcriptional regulator, LysR family"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q2RMN2 at UniProt or InterPro

Protein Sequence (301 amino acids)

>Rru_B0017 Transcriptional Regulator, LysR family (NCBI) (Rhodospirillum rubrum S1H)
MKPPPRQFPDLNLLVTLDALLSEGSVAGAADRMNLSPPAMSRQLARIRHLMGDPVLVRAG
RGLVPTPRAEALRGQLRQLIQEAEALVRGGGDFDPARIDHSFTIRANDGFVGTFGAAITR
MAVEQAPKVRLRFAPEGNEDVESLRDGRVDLDIGVIDAMGPEIRLQALFHDRFIGVVRPD
HPLARETVSVEAFVAYPHVSVSRRGRFEGPVDAALALRGKRRTVPVAVASVADGFSIAAQ
SDYIVLVPARVTAWHRQGLHSFDLPVTTDALPISAAWHPRFEKDAAHRWLRTCVRAACAA
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