Protein Info for Rru_B0005 in Rhodospirillum rubrum S1H

Annotation: Glycosyl transferase (NCBI)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 708 PF13641: Glyco_tranf_2_3" amino acids 4 to 153 (150 residues), 33.2 bits, see alignment E=1.7e-11 PF00535: Glycos_transf_2" amino acids 8 to 186 (179 residues), 97.4 bits, see alignment E=2.7e-31 PF16994: Glyco_trans_4_5" amino acids 310 to 367 (58 residues), 36.9 bits, see alignment 9.4e-13 PF20706: GT4-conflict" amino acids 500 to 655 (156 residues), 28.6 bits, see alignment E=2.2e-10 PF00534: Glycos_transf_1" amino acids 517 to 682 (166 residues), 77.9 bits, see alignment E=2e-25 PF13692: Glyco_trans_1_4" amino acids 532 to 671 (140 residues), 74.7 bits, see alignment E=2.8e-24

Best Hits

KEGG orthology group: None (inferred from 100% identity to rru:Rru_B0005)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q2RMP4 at UniProt or InterPro

Protein Sequence (708 amino acids)

>Rru_B0005 Glycosyl transferase (NCBI) (Rhodospirillum rubrum S1H)
MQSPPLVSVVMPVYNHERYVGEAIDSVFSQTYRPIELIIIDDGSTDKSAETVRQHLAAKP
APEGIIVDFVSRPNKGAHTTINEGLAKSSGSYLAILNSDDAYMPKRLARCIATAQEHEAR
MIFTYVEPIGDDGVDLDVGHPWRHWYADVMLNELDISPNISSLLLQYNIGVSTGNFLFHR
SLFEEVGPFHDFRYTHDIDFLLRASLIEEPVLVRERLYRYRLHGHNTISENDRKISEEYQ
EIVLRYFRETLIKRPANIFAPSFDNWVFSMVGSPWLPHMARAIEQLLKTPEAALSAPTET
KQPVLPGLDGRHVTLVSHELSYTGAPVLLRDVALALRREGVSSNVISLSSGPLAKEFIEA
GCQVTTEGRLPAFLSRLSRVSERFSHNGRFPAVFRKLFGKMSWLSGGISHRLRLRDYVKT
IKGPVLINSFASWPIALGLLEKRQGPAFWYIHETYDPRMLMRGLAHYRRLRALVDGGAVT
LLFGSEATRSVWAEAGFDGLVRYWSGLDPMPKSTLPTKKAKRVVLSVQASGTRKGTRVLL
EAFAFARREGLIGDDVELRIIGCHAPSWNYLSRDLIRRICEPDLIGAVRLIGSLEPAMLE
AHYQEADVYVQSSIMECLPLALLTAMAHSLPIVCSDADGCREAILDERTGRLVPPRQVKK
MGYALADLLGDRAKANKLGMAAGAHFAENFALRVTVPKLLDTLFTERS