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  • Negative cofitness for Psyr_1390 from Pseudomonas syringae pv. syringae B728a

    RNA-binding S4
    SEED: tRNA pseudouridine synthase A (EC 4.2.1.70)
    KEGG: ribosomal large subunit pseudouridine synthase F

    Computing cofitness values with 193 experiments...

    Genes with the strongest negative cofitness:

    Rank Hit Name Description Cofit  
    1 Psyr_4951 hypothetical protein -0.37
    2 Psyr_1806 Ureidoglycolate hydrolase -0.32
    3 Psyr_2387 Malate:quinone-oxidoreductase -0.31
    4 Psyr_0736 umuC protein -0.30
    5 Psyr_4900 AsmA -0.30
    6 Psyr_0626 DedA -0.29
    7 Psyr_4919 type III effector protein AvrPto1 -0.29
    8 Psyr_0063 Two-component response regulator AlgR -0.27
    9 Psyr_4223 conserved hypothetical protein -0.27
    10 Psyr_2414 murein-DD-endopeptidase, Serine peptidase, MEROPS family S11 -0.26
    11 Psyr_0853 conserved hypothetical protein -0.26
    12 Psyr_0103 conserved hypothetical protein -0.26
    13 Psyr_3826 Peptidyl-prolyl cis-trans isomerase, cyclophilin type -0.26
    14 Psyr_1052 mannose-6-phosphate isomerase, type 2 / mannose-1-phosphate guanylyltransferase (GDP) -0.25
    15 Psyr_1205 type III secretion protein HrcU -0.25
    16 Psyr_2393 Flavin reductase-like protein -0.25
    17 Psyr_1172 transcriptional regulator, AsnC family -0.24
    18 Psyr_4431 Urease accessory protein UreD -0.24
    19 Psyr_1213 type III secretion cytoplasmic ATPase HrcN -0.24
    20 Psyr_2816 hypothetical protein -0.23

    Or look for positive cofitness