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  • Negative cofitness for Psyr_1246 from Pseudomonas syringae pv. syringae B728a

    TPR repeat protein:TPR repeat protein
    SEED: Type IV pilus biogenesis protein PilF
    KEGG: type IV pilus assembly protein PilF

    Computing cofitness values with 193 experiments...

    Genes with the strongest negative cofitness:

    Rank Hit Name Description Cofit  
    1 Psyr_3123 type III effector HopAH2 -0.36
    2 Psyr_3597 ABC transporter -0.29
    3 Psyr_2646 Radical SAM -0.29
    4 Psyr_3938 Amidase -0.29
    5 Psyr_3229 Glycosyl transferase, group 1 -0.28
    6 Psyr_4887 Peptidase S41A, C-terminal protease -0.28
    7 Psyr_3224 Low molecular weight phosphotyrosine protein phosphatase -0.28
    8 Psyr_1067 GTP cyclohydrolase subunit MoaC -0.28
    9 Psyr_4225 galactarate dehydratase -0.28
    10 Psyr_0234 transcriptional regulator, AsnC family -0.28
    11 Psyr_0361 conserved hypothetical protein -0.28
    12 Psyr_2066 Protein of unknown function DUF214:Fimbrial assembly -0.28
    13 Psyr_4437 hypothetical protein -0.28
    14 Psyr_1317 conserved hypothetical protein -0.27
    15 Psyr_0507 Na+/solute symporter -0.27
    16 Psyr_0990 AMP-dependent synthetase and ligase -0.27
    17 Psyr_4086 MscS Mechanosensitive ion channel -0.27
    18 Psyr_4346 PhoH-like protein -0.27
    19 Psyr_1421 Phage integrase -0.27
    20 Psyr_0099 Conserved hypothetical protein -0.26

    Or look for positive cofitness