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  • Negative cofitness for PGA1_c01000 from Phaeobacter inhibens DSM 17395

    DNA-directed RNA polymerase subunit omega
    SEED: DNA-directed RNA polymerase omega subunit (EC 2.7.7.6)
    KEGG: DNA-directed RNA polymerase subunit omega

    Computing cofitness values with 282 experiments...

    Genes with the strongest negative cofitness:

    Rank Hit Name Description Cofit  
    1 PGA1_c13720 hypothetical protein -0.28
    2 PGA1_c04090 beta-ketoadipyl-CoA thiolase PaaJ -0.28
    3 PGA1_c04240 protein PhnG -0.24
    4 PGA1_c04080 phenylacetic acid degradation protein PaaA -0.23
    5 PGA1_c11330 Uncharacterized protein involved in methicillin resistance -0.22
    6 PGA1_c17350 3-hydroxyisobutyryl-CoA hydrolase (EC 3.1.2.4) (from data) -0.22
    7 PGA1_c17650 hypothetical protein -0.21
    8 PGA1_c24840 small heat shock protein IbpA -0.21
    9 PGA1_c04260 protein PhnI -0.21
    10 PGA1_c03480 hypothetical protein -0.21
    11 PGA1_c17630 hypothetical protein -0.21
    12 PGA1_c13690 3-oxoacyl-[acyl-carrier-protein] synthase III -0.21
    13 PGA1_c04060 phenylacetic acid degradation protein PaaC -0.21
    14 PGA1_c14630 trimethylamine methyltransferase MttB -0.21
    15 PGA1_c28810 transcriptional regulator, GntR family -0.21
    16 PGA1_c04070 phenylacetic acid degradation protein PaaB -0.21
    17 PGA1_c07770 TRAP transporter, subunit DctQ -0.20
    18 PGA1_c17670 transcriptional regulator, crp family -0.20
    19 PGA1_c27270 putative extracellular solute-binding protein -0.20
    20 PGA1_c19790 putative DNA polymerase III chi subunit, holC -0.20

    Or look for positive cofitness